Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D14
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   5.7  
DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.      27   5.7  
DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-couple...    27   5.7  
AF026211-1|AAB71293.2|  600|Caenorhabditis elegans Sodium:neurot...    27   5.7  
U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical ...    26   7.5  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    26   7.5  

>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 370 NNFDAQRKERDARVMFL*KT*RRHVPSASCARPCSI 263
           N++  +  +  A+ MF  KT    +P + C+RPC I
Sbjct: 484 NDYGVEELDMTAKSMFFDKT--ELLPESVCSRPCGI 517


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 370 NNFDAQRKERDARVMFL*KT*RRHVPSASCARPCSI 263
           N++  +  +  A+ MF  KT    +P + C+RPC I
Sbjct: 484 NDYGVEELDMTAKSMFFDKT--ELLPESVCSRPCGI 517


>DQ482733-1|ABF20556.1|  600|Caenorhabditis elegans SNF-3 protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 PMFTSVGIHMAA*FFFHN*CSYACVIIEPTIFLMVSSHNW 235
           P+F  VGI      F     +Y CVI+   +F M+SS  W
Sbjct: 106 PLFRGVGIGNVVIAFMC--IAYFCVIVAWAMFYMISSIAW 143


>DQ118731-1|AAZ23105.1|  600|Caenorhabditis elegans sodium-coupled
           betaine transporterprotein protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 PMFTSVGIHMAA*FFFHN*CSYACVIIEPTIFLMVSSHNW 235
           P+F  VGI      F     +Y CVI+   +F M+SS  W
Sbjct: 106 PLFRGVGIGNVVIAFMC--IAYFCVIVAWAMFYMISSIAW 143


>AF026211-1|AAB71293.2|  600|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 3
           protein.
          Length = 600

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 PMFTSVGIHMAA*FFFHN*CSYACVIIEPTIFLMVSSHNW 235
           P+F  VGI      F     +Y CVI+   +F M+SS  W
Sbjct: 106 PLFRGVGIGNVVIAFMC--IAYFCVIVAWAMFYMISSIAW 143


>U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical
           protein R08C7.4 protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 213 LWFHHTTGGTVGQRTFIIEHGRAQLALGTCRRY 311
           L+  H+    V +RTFI+E+G       TC  Y
Sbjct: 22  LFLQHSRQVKVIERTFILENGSQNRKRATCHYY 54


>AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical
           protein F45C12.10b protein.
          Length = 224

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +3

Query: 96  TLKKNSFRCSLLSASTWLHSFFFTTDAHMLV*SLNPQFSLWFHHTTGGTVGQRTFIIEHG 275
           TLKK   R  L    T LH FF    +     S++ QFS      TG ++ Q + +   G
Sbjct: 19  TLKKKK-RIKLAREGTQLHVFFSFLASRTTDQSVHIQFSTKLMRPTGESISQSSEVCLLG 77

Query: 276 --RAQLALGTC 302
             R +   G C
Sbjct: 78  GERQKYGFGFC 88


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 173 CSYACVIIEPTIFLMVSSHNWRDGRPAYFH 262
           CS + VI   T+ +++   NW+D + A+FH
Sbjct: 15  CSISFVIY--TLLIIMLLKNWKDFKSAFFH 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,346,457
Number of Sequences: 27780
Number of extensions: 191035
Number of successful extensions: 381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)