Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D12
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    25   1.0  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    23   5.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    23   7.2  

>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 70  VISNIYMFIFMDFFFP 23
           VIS I+ F +MDFF P
Sbjct: 193 VISIIFSFAYMDFFLP 208


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 63  LISTCSSLWISFFH 22
           ++STCS LWIS  +
Sbjct: 119 VLSTCSPLWISVIY 132


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 73  RVISNIYMFIFMDFFFPLVPNS 8
           R++SN++ FI + F    +PN+
Sbjct: 122 RMVSNLFAFISIQFLNRYLPNT 143


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 58  IYMFIFMDFFFPLVPNS 8
           +Y+F+F  F +P  PN+
Sbjct: 423 LYIFLFRTFIWPSEPNA 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,510
Number of Sequences: 5004
Number of extensions: 3202
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 10
effective length of database: 2,312,438
effective search space used: 41623884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)