Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D11
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 198 1e-51
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 198 1e-51
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 111 4e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.63
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.1
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34... 29 1.9
04_03_0232 - 13049649-13052807 29 2.5
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.7
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 198 bits (484), Expect = 1e-51
Identities = 91/108 (84%), Positives = 100/108 (92%)
Frame = +2
Query: 11 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 190
WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE
Sbjct: 36 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIE 94
Query: 191 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 334
ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 95 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 198 bits (484), Expect = 1e-51
Identities = 91/108 (84%), Positives = 100/108 (92%)
Frame = +2
Query: 11 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 190
WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE
Sbjct: 206 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIE 264
Query: 191 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 334
ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 265 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 195 bits (475), Expect = 2e-50
Identities = 89/106 (83%), Positives = 98/106 (92%)
Frame = +2
Query: 11 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 190
WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE
Sbjct: 36 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIE 94
Query: 191 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 328
ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 95 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 111 bits (266), Expect = 4e-25
Identities = 50/69 (72%), Positives = 57/69 (82%)
Frame = +2
Query: 11 WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 190
WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+
Sbjct: 107 WK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIK 165
Query: 191 ENDEVLVAG 217
EN+ V G
Sbjct: 166 ENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 197 DEVLVAGFGRKGHAVGDIPGVRFKVVK 277
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.63
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 279 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 148
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 122 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 24
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>11_01_0044 +
340486-340854,341855-341911,343100-343974,344065-344398,
345553-345645,345913-346062
Length = 625
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 2 HEGWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 118
HE A +GGA++ +++ GVE KQ S I + VR
Sbjct: 559 HEELHAGTYGGAAYRDLEIVKGTGVEGKQKGSYILQHVR 597
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 383 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 297
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 273 TTLNLTPGMSPTAWPLRPNPATNTSS 196
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,208
Number of Sequences: 37544
Number of extensions: 299748
Number of successful extensions: 770
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -