Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D11
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   210   5e-55
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   5e-07
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   5.2  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   5.2  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    27   6.9  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  210 bits (512), Expect = 5e-55
 Identities = 95/108 (87%), Positives = 103/108 (95%)
 Frame = +2

Query: 11  WKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 190
           WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +E
Sbjct: 36  WKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVE 95

Query: 191 ENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 334
           ENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 96  ENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +2

Query: 32  GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 211
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 212 AGFGRK 229
            G GR+
Sbjct: 129 KG-GRR 133


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 149 TAFVPRDGCLNHIEEN 196
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 292 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 155
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 292 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 155
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   HEGWKANPFGGASHAKGIVLEKVGVE 79
           HE +K + F  AS   G+ LEK G+E
Sbjct: 577 HESFKTDCFSTASEHDGLELEKNGIE 602


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 173 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 280
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


>AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical
           protein R148.2 protein.
          Length = 95

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 185 IEENDEVLVAGFGRKGHAVGDIPGVRF----KVVKVANVSLLALYKEKKERPR 331
           +E+N   +++  G  G  V D  GVR     K+  +ANV  L +   K   P+
Sbjct: 5   LEQNVTAMMSSTGASGITVADSEGVRLHSAGKITDMANVGSLMIADAKNMFPK 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,340,125
Number of Sequences: 27780
Number of extensions: 235434
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)