Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D10
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    80   7e-16
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    30   0.92 
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    29   1.2  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    29   1.2  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    29   1.2  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    29   1.2  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z83226-4|CAI79261.2|  206|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
 Frame = +3

Query: 24  MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 194
           MQ+ + G   +TH LDV+   ++  IK  +        EE ++S     L +   + E  
Sbjct: 1   MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55

Query: 195 --SSTELDLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVN 368
             S + L +   LLGGKVHGSLARAGKV+ QTP                  +QY RR+VN
Sbjct: 56  IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115

Query: 369 VVQTFGRRRGPNSNS 413
           V    G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 51  THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 191
           ++   ++ ++++ DIKN +    D+      LS  G  LED C + +
Sbjct: 164 SYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 263
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587

Query: 264 GKV 272
             V
Sbjct: 588 ASV 590


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 263
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 264 GKV 272
             V
Sbjct: 786 ASV 788


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 263
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853

Query: 264 GKV 272
             V
Sbjct: 854 ASV 856


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 263
           G ++ +  L A++ES  +   +    + D+ +++ L    L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 264 GKV 272
             V
Sbjct: 786 ASV 788


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 343 ILRLARPVLFFFFCCFSTLGVWPLTLPA 260
           IL+ ++PV +F       + V+P TLPA
Sbjct: 257 ILKFSQPVSYFALVILLAINVFPFTLPA 284


>Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical
           protein C29F3.5 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 322 VLFFFFCCFSTLGVWPLTLPARARDPCTLP 233
           ++F FFC FS  G  P+T P    +P  +P
Sbjct: 6   IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32


>Z83226-4|CAI79261.2|  206|Caenorhabditis elegans Hypothetical
           protein F43D2.6 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 367 FTNLLLYWILRLARPVLFFFFCCFSTLGVW 278
           +T L++  ++ +   VL  FFCC    G W
Sbjct: 87  YTMLIIGLLVSIVLSVLLSFFCCLLCNGCW 116


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 376 WTTFTNLLLYWILRLARPVLFFFF 305
           W   +NL++Y    LA PV+ FF+
Sbjct: 190 WPNTSNLVIYGACLLASPVICFFY 213


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 346 WILRLARPVLFFFFCCFSTLGVWPLTLPARA 254
           W L +A  V    F  F+TL V PL++P+ A
Sbjct: 79  WNLLIALAVCDSLFLIFATLDVTPLSIPSLA 109


>AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical
           protein ZC328.5 protein.
          Length = 191

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 265 PARARDPCTLPPRRGTVRSSSVDES 191
           P RA+ P T PP   TV SS+  +S
Sbjct: 24  PCRAKRPTTEPPSTTTVESSTTRDS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,192
Number of Sequences: 27780
Number of extensions: 180818
Number of successful extensions: 577
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)