Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D09
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    33   0.019
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    29   0.24 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   2.9  
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    25   3.9  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    24   9.0  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    24   9.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    24   9.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 32.7 bits (71), Expect = 0.019
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 312 DYESYEWTKLDPHSPDTKALLRDYFSW 232
           D+ SY +TKLD + P+ KA + D ++W
Sbjct: 367 DWGSYTFTKLDINKPEDKAFIEDAWAW 393


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = -3

Query: 204 FKPGGARSSSRLDAS-----HLTSCPKXPHTSNL*EQT---VSYLYSIKLHLLYALFLVH 49
           FKP G + S ++D S     +++  P  P+T N   +    V+ LY+IKL  L A     
Sbjct: 466 FKPVGIKESDKMDFSRRKDAYISMLPFSPNTENTAHRVTIMVAKLYNIKLDSLIAAIRYV 525

Query: 48  ISCV 37
            SC+
Sbjct: 526 ESCL 529


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 70  IRSVPCTYLLRLCENVISNYNN 5
           + S+ C  +LRL  N+ISN+ N
Sbjct: 308 LTSLTCVPMLRLLSNMISNFPN 329


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 26  ILTETQEICTRNRAYNKCNFIEYK*DTVCSYKLDV*GXFGH 148
           I  E   +  + RA  K  F     +T CS+ LDV G  G+
Sbjct: 59  IFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGN 99


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 246 DYFSWTGTDKD 214
           DYF WTG ++D
Sbjct: 163 DYFQWTGEEED 173


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 176 VDWTPHTSHHAQXHLTHLTYKSKPCL 99
           +DWT H   H     +  +Y SK C+
Sbjct: 136 LDWTLHGRSHINEQWSMRSYVSKNCI 161


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 151 CEV*GVQST*RSCPPWLE 204
           CE+  ++   RSC PW++
Sbjct: 301 CEIDALECVLRSCQPWVQ 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,788
Number of Sequences: 5004
Number of extensions: 22642
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)