Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D09
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0590 + 4684652-4685296,4687327-4687466,4688222-4688768           29   1.2  
04_01_0345 + 4529272-4530514,4530634-4530740                           29   1.2  
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734...    27   4.8  
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130...    27   4.8  
12_01_0554 + 4498885-4499138,4499249-4499322,4500047-4500129,450...    26   8.4  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    26   8.4  
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736...    26   8.4  
04_03_0689 + 18746735-18748296,18748401-18748485                       26   8.4  
02_02_0347 + 9222556-9222927                                           26   8.4  

>11_01_0590 + 4684652-4685296,4687327-4687466,4688222-4688768
          Length = 443

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 221 TRTAASSSQGGQDLQVDWTPHTSHHAQXHLTHL 123
           T TAASS +  Q L V  +P+T  H    L+HL
Sbjct: 213 TTTAASSWRARQPLLVPVSPNTHSHTHLSLSHL 245


>04_01_0345 + 4529272-4530514,4530634-4530740
          Length = 449

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 230 PAPTRTAASSSQGGQDLQVDWTPHTSHH 147
           P P R AA+++  G DL V W P T+ H
Sbjct: 117 PCPRRAAAATTSLGHDLVV-WDPFTNEH 143


>02_03_0293 -
           17372071-17372217,17372301-17372471,17373334-17373435,
           17373803-17374216,17374369-17374512,17374634-17375647
          Length = 663

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = -3

Query: 297 EWTKLDPHSPDTKALLRDYFSWTGTDKDGRKFKPGGARSSSRLDASHLTSCPKXPHTSNL 118
           +W K          LL+DY S   T  DG K  PG   +S   DA     C   PH  +L
Sbjct: 599 DWLKAYYRQGAALMLLKDYESACETLYDGFKLDPG---NSEMEDALRYPFCLFRPHYGSL 655

Query: 117 *E 112
            E
Sbjct: 656 FE 657


>02_01_0193 -
           1305109-1305249,1305677-1305835,1305922-1305969,
           1306621-1306752,1306842-1306896,1307600-1307649,
           1307822-1307917,1308001-1308078,1308169-1308243,
           1308648-1308764,1308843-1308911,1309035-1309358,
           1309534-1309587,1309688-1309747
          Length = 485

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 324 DWQIDYESYEWTKLDPHSPDTKALLRD 244
           D++ D    E     PHSPD +AL R+
Sbjct: 312 DYRFDVSKLEPVIAKPHSPDNRALARE 338


>12_01_0554 +
           4498885-4499138,4499249-4499322,4500047-4500129,
           4500298-4500322,4500439-4500458,4501263-4501409,
           4501994-4502461
          Length = 356

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 35  ETQEICTRNRAYNKCNFIE 91
           E  EIC R + Y  CN +E
Sbjct: 217 ELMEICRRTKGYRVCNMLE 235


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 306  ESYEWTKLDPHSPDTKALLRDYFSWTGTDKDGRKFKPGGARSSSR 172
            E +E+ +L      T+ LLRDY         GRK K GGA+   +
Sbjct: 1982 EEHEYRRLKVSDKRTRVLLRDYLY-------GRKEKRGGAQKKKK 2019


>06_03_0934 -
           26073084-26073220,26073296-26073345,26073465-26073634,
           26073651-26073803,26073877-26074032,26074227-26074350,
           26075066-26075178,26076336-26076469,26077391-26077578,
           26077718-26078139
          Length = 548

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 212 AASSSQGGQDLQVDWTPHTSHHAQXHLTHLTYKSKPCLIYIQ 87
           AA+++ GG        P T+H+    L H T+      ++ Q
Sbjct: 65  AAAAAAGGNGTAAAAKPFTAHYFPQELDHFTFTPNASAVFYQ 106


>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 289 QARPPQPRHQGAAP 248
           Q RPPQP+ QG +P
Sbjct: 16  QPRPPQPQQQGGSP 29


>02_02_0347 + 9222556-9222927
          Length = 123

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 181 RSCPPWLELAAVLVGAGPGEVVAEQR 258
           R  PPW   AA  V  G G    EQR
Sbjct: 60  RPPPPWTRSAAEAVAVGKGHCQGEQR 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,307,399
Number of Sequences: 37544
Number of extensions: 175148
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)