Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D09
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...    56   8e-09
Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    56   8e-09
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    56   8e-09
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AF125460-2|AAD12846.1|  151|Caenorhabditis elegans Hypothetical ...    27   3.3  
AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical...    27   5.8  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    26   7.6  

>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score = 56.0 bits (129), Expect = 8e-09
 Identities = 24/44 (54%), Positives = 28/44 (63%)
 Frame = -3

Query: 324 DWQIDYESYEWTKLDPHSPDTKALLRDYFSWTGTDKDGRKFKPG 193
           DWQ+DYESY WTKLD  S  TK  + +Y  W G D  G+KF  G
Sbjct: 319 DWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQG 361



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 373 GVWVWRGHELAF 338
           G+WVW+G +LAF
Sbjct: 303 GIWVWKGDKLAF 314


>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 56.0 bits (129), Expect = 8e-09
 Identities = 24/44 (54%), Positives = 28/44 (63%)
 Frame = -3

Query: 324 DWQIDYESYEWTKLDPHSPDTKALLRDYFSWTGTDKDGRKFKPG 193
           DWQ+DYESY WTKLD  S  TK  + +Y  W G D  G+KF  G
Sbjct: 327 DWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQG 369



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 373 GVWVWRGHELAF 338
           G+WVW+G +LAF
Sbjct: 311 GIWVWKGDKLAF 322


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 56.0 bits (129), Expect = 8e-09
 Identities = 24/44 (54%), Positives = 28/44 (63%)
 Frame = -3

Query: 324 DWQIDYESYEWTKLDPHSPDTKALLRDYFSWTGTDKDGRKFKPG 193
           DWQ+DYESY WTKLD  S  TK  + +Y  W G D  G+KF  G
Sbjct: 352 DWQVDYESYTWTKLDAKSDATKKEVNEYLMWEG-DFGGKKFNQG 394



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 373 GVWVWRGHELAF 338
           G+WVW+G +LAF
Sbjct: 336 GIWVWKGDKLAF 347


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 172 TGRLTPHIMPKXTSHI*LIRANRVLFIFNKI 80
           TGR++P I P+   H  + R N  LF+  K+
Sbjct: 120 TGRVSPTIPPETLFHDAIKRCNNCLFLIRKL 150


>AF125460-2|AAD12846.1|  151|Caenorhabditis elegans Hypothetical
           protein Y9D1A.2 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 315 IDYESYEWTKLDPHSPDTKALLRDYFSWTGTDKDG 211
           +D++   W  +D        + RD   W GTD+DG
Sbjct: 1   MDWDGSGWIGMDRDGSGWIGMDRDGSGWIGTDRDG 35


>AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical
           protein Y17G7B.23 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 152 VRCEASSLLEDLAPPGLNLRPSLSVPVQEK*SRSSALVSGLWG 280
           ++C  S+L+ED    GL L+P+ ++   +K    ++LVS + G
Sbjct: 14  IQCATSNLMEDWGATGLPLKPA-NLLFDDKCGTPNSLVSTVSG 55


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 324  DWQIDYESYEWTKL 283
            D Q+D+++YEW KL
Sbjct: 2676 DGQVDFQNYEWQKL 2689


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,468,254
Number of Sequences: 27780
Number of extensions: 134165
Number of successful extensions: 314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)