Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D09
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.1  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   3.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   8.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   8.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 200 SQGGQDLQVDWTPHTSHHAQXHLTHLTYK 114
           S GG+++    TP  SH +  H+  + YK
Sbjct: 149 SSGGEEI----TPRQSHQSYHHMDSVEYK 173


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 YKLDV*GXFGHDVRCEASSLLEDLAPP 196
           YK+ +     H+VRC A  LL    PP
Sbjct: 687 YKIYLNTMESHEVRCTAVFLLMKTNPP 713


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 230  PAPTRTAASSSQGGQDLQVDWTPHTSHHA 144
            P   R AA +SQ    LQV W P  + H+
Sbjct: 1115 PEDVRCAALTSQS---LQVSWQPPPNTHS 1140


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 230  PAPTRTAASSSQGGQDLQVDWTPHTSHHA 144
            P   R AA +SQ    LQV W P  + H+
Sbjct: 1111 PEDVRCAALTSQS---LQVSWQPPPNTHS 1136


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  MTFSQRRKRYVQGTERIINAIL 86
           +T +  R  Y+ GT+R+I A L
Sbjct: 61  VTLAGNRYIYLSGTDRVIRAKL 82


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 192 GARSSSRLDASHLTSCPKXPHTSNL*EQTVSYLYSIKLH 76
           G   S +L     T   + P+T ++  ++  Y + +KLH
Sbjct: 212 GFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLH 250


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = -3

Query: 66  ALFLVHISCVSVRMSSLITITF 1
           A+F+  ++ +S+ +  +IT++F
Sbjct: 408 AIFIAQMNGISLGIGEVITVSF 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,894
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)