Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D08
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   4.9  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.5  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   8.6  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 436 FCLHKSHVVRSEAADRYRKLKCFTS*LTPSSNTNGGILAPAGY 308
           FC H   +V  E  D    LKC+ + L  S N N  +   A Y
Sbjct: 77  FCWHALAIVYRETKDYNNSLKCYQNALAISPN-NESLWYDAAY 118


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 140 HDSQIIEQGSKSVRQTDSRLAKKEDTSSFKVNE 42
           + +  +++  +  RQT S   KKE+ SS K +E
Sbjct: 10  YSNAYVDELKRKSRQTPSEFTKKEEDSSTKESE 42


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = +1

Query: 4    RGAAQILYVTYKCSLTLKEEVSSFFAKRESVCRTLLLPCSIICESCINTF*ISVENVIIP 183
            + +  IL   +  +  L +E++++ +K+ES+C          C S + T  ++ E+ +  
Sbjct: 890  KNSNDILSSVFTINDMLIDEMTAYLSKKESLCSGTFSCLLACCNSVLRTQNLTSES-LNK 948

Query: 184  VHFLK 198
            +H LK
Sbjct: 949  LHILK 953


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 335 WRYISTGWLHLARVLFT 285
           WR    GWL L R LFT
Sbjct: 424 WRSFPYGWLSLPRSLFT 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,524
Number of Sequences: 5004
Number of extensions: 52194
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)