Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D08
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting comp...    30   5.6  
BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting comp...    30   5.6  
AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein.        30   5.6  
BC043610-1|AAH43610.1|  359|Homo sapiens purinergic receptor P2Y...    30   7.4  
AL683870-6|CAI39849.1|  359|Homo sapiens purinergic receptor P2Y...    30   7.4  

>BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting complex
           subunit 1 protein.
          Length = 1944

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -3

Query: 355 TPSSNTNGGILAP--AGYTWHVSCSHKYTCTLLNINAYLTFSCNSCAIK*FMPNTLKSGQ 182
           +P+SN+NG  LAP        +   H +T T+ NI        NS A K F+ + L  GQ
Sbjct: 386 SPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR-----EKNSQASKVFITSDL-CGQ 439

Query: 181 ELLHFLQKSKM 149
           + L FL +S++
Sbjct: 440 KFLCFLVESQL 450


>BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting complex
           subunit 1 protein.
          Length = 1944

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -3

Query: 355 TPSSNTNGGILAP--AGYTWHVSCSHKYTCTLLNINAYLTFSCNSCAIK*FMPNTLKSGQ 182
           +P+SN+NG  LAP        +   H +T T+ NI        NS A K F+ + L  GQ
Sbjct: 386 SPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR-----EKNSQASKVFITSDL-CGQ 439

Query: 181 ELLHFLQKSKM 149
           + L FL +S++
Sbjct: 440 KFLCFLVESQL 450


>AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein.
          Length = 1944

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -3

Query: 355 TPSSNTNGGILAP--AGYTWHVSCSHKYTCTLLNINAYLTFSCNSCAIK*FMPNTLKSGQ 182
           +P+SN+NG  LAP        +   H +T T+ NI        NS A K F+ + L  GQ
Sbjct: 386 SPNSNSNGSFLAPETEPIVPELCIDHLWTETITNIR-----EKNSQASKVFITSDL-CGQ 439

Query: 181 ELLHFLQKSKM 149
           + L FL +S++
Sbjct: 440 KFLCFLVESQL 450


>BC043610-1|AAH43610.1|  359|Homo sapiens purinergic receptor P2Y,
           G-protein coupled, 8 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  VRLSHALATLFYNL*IMYQYILDFCRKCNNSCPLFKVFGINYFIAQELQ 236
           V L+H ++ LFY     + Y L  C  C N+C     F + YF ++E Q
Sbjct: 256 VLLAHIVSRLFYGKSYYHVYKLTLCLSCLNNC--LDPF-VYYFASREFQ 301


>AL683870-6|CAI39849.1|  359|Homo sapiens purinergic receptor P2Y,
           G-protein coupled, 8 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  VRLSHALATLFYNL*IMYQYILDFCRKCNNSCPLFKVFGINYFIAQELQ 236
           V L+H ++ LFY     + Y L  C  C N+C     F + YF ++E Q
Sbjct: 256 VLLAHIVSRLFYGKSYYHVYKLTLCLSCLNNC--LDPF-VYYFASREFQ 301


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,988,753
Number of Sequences: 237096
Number of extensions: 1814953
Number of successful extensions: 2490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2489
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)