Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D08
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical...    31   0.65 
U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81537-1|CAB04372.1|  326|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL021497-10|CAD56614.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51A2D.13b protein.
          Length = 490

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 430 NRMHHNSFITRLLMFTSVSLKTQVNPQSLVHTVKLYQCFNSNHYRL 567
           N+ +H  F+  L+ F ++ L T++  +  +  V+  QCFN+   R+
Sbjct: 15  NKENHEGFVILLIPFLTIGLITKLPEKPEIQLVRDRQCFNTCKLRI 60


>U58756-6|AAY44007.1|  286|Caenorhabditis elegans Hypothetical
           protein F58F9.9 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 TRKC*ICINV*ECACVFM*TGHVPSVTSRC*Y 328
           TRKC +  N+  CACV   T ++P  T  C Y
Sbjct: 55  TRKC-LSTNIPNCACVGDTTRYIPCNTKTCVY 85


>Z81537-1|CAB04372.1|  326|Caenorhabditis elegans Hypothetical
           protein F41D3.1 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = +3

Query: 192 FKVFGINYFIAQELQENVKYALMFKS-VHVY-LCEQDTCQV*PAGANIPPL-VLEL-GVS 359
           + V G+   IAQ+  +NV  AL  KS V ++ + E +   V     N P + VLE   V 
Sbjct: 122 YYVDGVEDTIAQKQNDNVMNALQIKSIVELHKISEMENNVVLDDCLNCPGVDVLEQDDVE 181

Query: 360 *LVKHFSFLYRSAASLLTTWDLCKQNAPQ 446
            L+K+F F+     S L +   C +  P+
Sbjct: 182 VLLKYFKFVNIWVYSALASSSTCLEQFPE 210


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 352 PSSNTNGGILAPAGYTWHVSCSHKYTCTLLNINAYLTFSCNSCAIK*FMPNTLKSGQ 182
           PSSN NGG          + C H+  C   +I  Y T  C+    +  +PNT+ SG+
Sbjct: 483 PSSN-NGGAPCQGDEARGMVC-HRDVCNGDSIENYATRVCSRLRDENAIPNTILSGE 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,561
Number of Sequences: 27780
Number of extensions: 304547
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)