Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D07
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    24   2.4  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    23   4.1  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    23   5.5  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    23   5.5  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 71  SYLYYKNDTSNYLTGAKI 124
           +YLY  +D S+Y TG+ I
Sbjct: 229 AYLYLASDASSYCTGSDI 246


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 77  LYYKNDTSNYLTGA 118
           LY+KN TSN+  GA
Sbjct: 323 LYHKNGTSNHRAGA 336


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 164 VGNRATFISSRVFLS*HQ*GNLMYHFYSRDKSKWDPITSQCFVERDTAAE 15
           VG+  TF+ ++  L+ +   + MY+FY + +S     +  C+    TA +
Sbjct: 333 VGSTPTFVQTQCPLADNAVRSGMYYFYLKFESLNRIASRSCYCHFTTATD 382


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 78  STIKMIHQITSLVLR*EHSRTDKRSAITYVYTNFKVNQN 194
           S +K++H  T    + E S  +    +   YT+ K +QN
Sbjct: 35  SLLKLLHPETGTSRKFEKSAQEAIEKVNSFYTHLKSSQN 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 768,732
Number of Sequences: 5004
Number of extensions: 11356
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)