Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D07
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical ...    26   3.2  
AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical...    26   3.2  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical
           protein C03H5.2 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 66  LTLISTIKMIHQITSLVLR*EHSRTDKRSAITYV 167
           L LIS + +I Q T+LVL   +S+T K     Y+
Sbjct: 11  LKLISLVVLIVQTTALVLTLRYSQTQKSEGPRYL 44


>AC006708-16|AAF60431.2|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.7 protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 116 HQ*GNLMYHFYSRDKSKWDPI 54
           H  G++ Y+FYS  K+ W P+
Sbjct: 111 HNAGSVHYYFYSALKTMWSPM 131


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 104  NLMYHFYSRDKSKWDPITSQC 42
            +L+Y    RDKS WD I+  C
Sbjct: 1329 SLLYFRGERDKSDWDAISKCC 1349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,139,130
Number of Sequences: 27780
Number of extensions: 57473
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)