Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D06
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 43 3e-05
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 34 0.019
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 31 0.14
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 2.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 2.9
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 26 5.1
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 5.1
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 26 5.1
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 26 5.1
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 6.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.0
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 9.0
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 73 NMAEIQTLIEMGFPKERAEKAMAVTNYKGVEPAMEWLLAHADDPGMQ--TEASSSQAPVG 246
N + I+ L MGFP R ++A+ T E AM WL H +DP + E S
Sbjct: 578 NQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEIDKPIEVSELLPKAD 637
Query: 247 SSTNE 261
SS +E
Sbjct: 638 SSVSE 642
Score = 34.3 bits (75), Expect = 0.015
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +1
Query: 85 IQTLIEMGFPKERAEKAMAVTNYKGVEPAMEWLLAHAD----DPGMQ-TEASSSQAPVGS 249
+Q+L E GF +A K + +N +E A++W+L H D +P ++ +++S +GS
Sbjct: 645 VQSLCEFGFTVAQARKGLLESN-NNIERAVDWILNHPDESFEEPPLEGSDSSIKNENMGS 703
Query: 250 --STNEP 264
STN P
Sbjct: 704 WESTNVP 710
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 319 KCDDCGKLLKDQDEMEFHAAKTNHSSF 399
KC +C KLL + EFH+ KT+H F
Sbjct: 4 KCLECDKLLSSIEMAEFHSTKTSHDQF 30
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 85 IQTLIEMGFPKERAEKAMAVTNY 153
+Q L+ MGFP+E+A A+ TNY
Sbjct: 794 LQELLSMGFPREKAVIALEATNY 816
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 172 MEWLLAHADDPGMQTEASSSQAPV 243
+ W L H DDPG+Q ++ A V
Sbjct: 329 LSWCLPHIDDPGLQLMFENTDALV 352
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 163 EPAMEWLLAHADDPGMQTEASSSQAPVGSSTNEPSDAARASTNEDNQEAK 312
E + L + DP QT+ SS ++ E SD ++ + N D E K
Sbjct: 280 EQGTVYSLKASHDPSNQTQLSSPNKSSSPTSIEISDFSKNNENHDQSENK 329
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 109 FPKERAEKAMAVTNYKGVEPAMEWLLAHADDPG 207
FPK+ A K + +T + G + M ++ D PG
Sbjct: 32 FPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 553 GKELQDARQRMQELEMQKLVEQRR 624
G ELQDA++R+ EL+ + +RR
Sbjct: 473 GSELQDAKRRLDELKAKAEDAERR 496
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 109 FPKERAEKAMAVTNYKGVEPAMEWLLAHADDPG 207
FPK+ A K + +T + G + M ++ D PG
Sbjct: 32 FPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 5.1
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Frame = -2
Query: 336 STIITFKRLRFLIIFVRGSTGRV*RLICTTAHRGLRTRSFCLHTRIVSMR*QPLHSRFDT 157
S + F ++ +I+ G + + + + + CL I+ P+ +
Sbjct: 82 SIVFMFCLMQIYVIWTSNGFGSIEYSVMAQFNVSAQVATLCLSMNILGSGLGPMFLGPLS 141
Query: 156 FIIGYSHSFFCSFFRKTHFN-ECLYFSHIXXXXXXLFIIRFLG 31
I G +FCS F T FN C +I FII G
Sbjct: 142 DIGGRKPVYFCSIFVYTVFNISCALPRNIVQMIISHFIIGVAG 184
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 295 LRSWKHGPRLKAHLYYCPPGPEN 227
+ W H A + CPP PEN
Sbjct: 1146 MNEWIHSLNFNAAMITCPPLPEN 1168
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 223 SSSQAPVGSSTNEPSDAARA---STNEDNQEAKSFKCDDCGKLLKDQDEMEFHAAKTNHS 393
SSS+A S+++ SD++ + S++EDN + S + +D D + + S
Sbjct: 98 SSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESES 157
Query: 394 S 396
S
Sbjct: 158 S 158
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 193 ADDPGMQTEASSSQAPVGSSTNEPSDAARA-STNEDNQEAKSFKCDDCGKLLKDQDEMEF 369
+D +++ S + GS ++ S ++ + S++EDN + S + +D D
Sbjct: 144 SDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 203
Query: 370 HAAKTNHSS 396
+ + SS
Sbjct: 204 SSDSESESS 212
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 193 ADDPGMQTEASSSQAPVGSSTNEPSDAARA-STNEDNQEAKSFKCDDCGKLLKDQDEMEF 369
+D +++ S + GS ++ S ++ + S++EDN + S + +D D
Sbjct: 198 SDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 257
Query: 370 HAAKTNHSS 396
+ + SS
Sbjct: 258 SSDSESESS 266
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 212 KQKLLVLRPRWAVVQMSLQTRPVLPRTKIIR 304
K KL +L R Q ++ RPVLPRT IR
Sbjct: 493 KNKLTMLAAR----QKKIKNRPVLPRTAGIR 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,652
Number of Sequences: 5004
Number of extensions: 41934
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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