Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D05
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    84   8e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    83   2e-17
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.55 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   2.2  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   2.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   2.9  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    24   8.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   8.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   8.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   8.9  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 84.2 bits (199), Expect = 8e-18
 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
 Frame = +1

Query: 76  PTISAGQN-GHLQTK-PLTIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVS 249
           P +  G N G + TK  L  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S
Sbjct: 3   PGLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNS 62

Query: 250 KDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 351
           +DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 63  QDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
 Frame = +1

Query: 76  PTISAGQN-GHLQTK-PLTIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVS 249
           P +  G N G   TK  L  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S
Sbjct: 3   PGLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNS 62

Query: 250 KDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 351
           +DKRA K  K+RLGT  RAK K EEL++V+   R
Sbjct: 63  QDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 196  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLTQMR 351
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 257 LSFDTLSNSIALFSYCACPTTS 192
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 109 QTKPLTIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAME 234
           Q   L  RPA L+ ++T  SKFV  +    V    Y K  ++
Sbjct: 20  QRSSLLARPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 184 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 315
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  QNGHLQTKPLTIRPARLKGIQT 159
           QNGHLQ + +  RP R   + T
Sbjct: 843 QNGHLQGERVLFRPLRSPALNT 864


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 25  GSPDLKSQLVCEKATKRPTISAGQNGHLQTKPLTIRPARLKGIQTKHSKFVRDLVREVVG 204
           GSP + +  + E    +  +   Q GH     +  R   +   +    +F  +   +++ 
Sbjct: 500 GSPKIVNSNIDEACFDK-VLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLD 558

Query: 205 HAQYEKRAMELLKVSKDK-RALKFL-KRRLGTH 297
           ++Q+EK ++    VSK K + LK L K  +G H
Sbjct: 559 NSQHEKYSLAQRDVSKSKNKELKELFKYSMGIH 591


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 245 TLSNSIALFSYCACPTTSRTKSRTNLEC 162
           T+++S  LF+  A   T+ TKS  N+EC
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVEC 877


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 352 SSSVLVRC*ALHASSSRGCVCRGDAS 275
           S  V++   + H S++RGC+   DAS
Sbjct: 406 SDKVIIGYDSFHTSNNRGCLALFDAS 431


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 267  KGALIFRYFEQFHCPL--LILCVPNNFTNQI 181
            KG  I   F     PL  LI CVPNNF  ++
Sbjct: 1117 KGWAISIVFGVISIPLGALIRCVPNNFLRKV 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,549
Number of Sequences: 5004
Number of extensions: 30862
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)