Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D05
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   104   2e-23
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    32   0.21 
Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical p...    29   1.5  
AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    28   2.6  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U64859-4|AAC69094.1|  145|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  104 bits (250), Expect = 2e-23
 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
 Frame = +1

Query: 82  ISAGQN-GHLQTK-PLTIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKD 255
           ++ G N GH  T+ P+  R  R KG+ +K +K VR+LVRE+ G A YE+R +E+L++SKD
Sbjct: 9   LAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKD 68

Query: 256 KRALKFLKRRLGTHIRAKRKREELSNVLTQMR 351
           KRALKFLKRR+GTH RAK KREEL NV+   R
Sbjct: 69  KRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = +1

Query: 34  DLKSQLVCEKATKRPTI--SAGQNGHLQTKPLTIRPARLKGIQTKHSKFVRDLVREVVGH 207
           DL+  L  EK  +  +I  S  +   L+ K      AR+K  + K  K + +  R+    
Sbjct: 499 DLEETLKLEKRIEEVSIEESKKKQEKLELKQREEEEARIKEEEEKQRKILEEEARKKQEE 558

Query: 208 AQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAKRKREE 324
            +   +A E LK+ ++++  K L  +R+    +  KRK EE
Sbjct: 559 EEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEE 599


>Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 336 YVAELFTLPLRADVCAEATLQELKGALIFR 247
           Y+  LFTLPL A  C +  +QE + A+IFR
Sbjct: 35  YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63


>AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 336 YVAELFTLPLRADVCAEATLQELKGALIFR 247
           Y+  LFTLPL A  C +  +QE + A+IFR
Sbjct: 35  YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 130 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 267
           R   LK ++  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 130 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 267
           R   LK ++  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +1

Query: 142 LKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 261
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +1

Query: 142 LKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 261
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 127 IRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 261
           ++  ++  + T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 175 VRDLVREVVGHAQYEKRAMELLKV 246
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>U64859-4|AAC69094.1|  145|Caenorhabditis elegans Hypothetical
           protein R09F10.5 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 100 GHLQTKPLTIRPARLKGIQTKHSKFVRDLVREVVGHAQYEK 222
           G +Q  P+  R  + KG+    S+ V++++RE+    QYE+
Sbjct: 49  GKVQIMPIVQRDTKHKGV----SETVQEIIRELPNDEQYER 85


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ARGSIRNHGSPDLKSQLVCEKA-TKRPTISAGQNGHLQTKP 120
           A+ +    GSP  +S        T + ++S G NGH++T+P
Sbjct: 584 AQAANAQRGSPANRSSRSSPSPHTNKSSVSPGNNGHVKTEP 624


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 184 LVREVVGHAQYEKRAMELLKV 246
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.130    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,451,198
Number of Sequences: 27780
Number of extensions: 179567
Number of successful extensions: 549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)