Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D04
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    40   4e-04
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    29   0.40 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   2.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   6.6  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   6.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.7  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   8.7  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +3

Query: 219 AAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAYARNPSLKQQLFSYAILGFALSE 380
           AAK+                    F +LI   +RNPS++  LFS AILGFAL+E
Sbjct: 4   AAKYIGAGLATIGVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 310 LMPGTPPLNNSCSHMPSWVSPCLRLWVSSVL*WRSFCCSLSKLSIILRTLQLPSYI 477
           L  G P  N +  ++   +S  L  W  SVL W++  CS S L  IL  + +PS+I
Sbjct: 105 LEAGCPFTNTTKQNVDPEISNAL--W--SVLTWKNTSCSFSTLMSILALVYVPSWI 156


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 407 HHKTEETHSLRQGETQDGI*EQLLFKGGVPGISNDEGTEYRSNTRSGSS 261
           H    ET      +T D +    L K G+P  +ND   + ++N R  SS
Sbjct: 565 HPSATETKEETPKKTSDSLSLLTLLKSGLPTPANDLQNKSQNNERKASS 613


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 601 TRTVSVI*HIYTSVQALLEDEVSTHSI-PRPSTPDSN 494
           T+T  +I H  T + +LLE++++   I   P TP+S+
Sbjct: 31  TKTADIINHFIT-IHSLLEEKIAAVEILENPRTPNSS 66


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 38  NAVCRKIDRPCSQDCYLQQHSSCATTRSS 124
           +A    + +PCSQ  +L++  SC T  S+
Sbjct: 377 SAYVASLPQPCSQKRHLEEDYSCLTEHSA 405


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 131  CRHCCEWSHKSCVAEDS 81
            C +C EW H  CV   S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 8   GQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSC 106
           G   + S+    VC K DRP   +     HSSC
Sbjct: 71  GSYPNNSELDYVVCTKCDRPFLSEYIEDHHSSC 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,716
Number of Sequences: 5004
Number of extensions: 45917
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)