Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D04
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    30   1.3  
09_06_0041 - 20440266-20441381                                         29   2.9  
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     29   3.9  
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916...    28   5.1  
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774...    28   6.8  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    27   8.9  
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    27   8.9  
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635           27   8.9  

>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 458 SVLKIIDSLESEQQKERHHKTEETHSLRQ 372
           +VLK   +++ E+QKE   +T+E HSL+Q
Sbjct: 210 AVLKRAVAIQHERQKEFDERTQEVHSLKQ 238


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 316 PGTPPLNNSCSHMPS-WVSPCL 378
           PG PPLNNS    PS W+ P L
Sbjct: 349 PGAPPLNNSSLIRPSVWIFPSL 370


>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 74  QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 196
           ++C+ ++ S  A  + S + HTD           A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404


>08_02_0785 +
           21190002-21190253,21190452-21190523,21191498-21191631,
           21191700-21191850,21191938-21192087
          Length = 252

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 152 NWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDPR 3
           N  + C C    +++H++CV        +GD +C I H     G T  PR
Sbjct: 72  NLESPCACTGSLKYAHRACVQRWCDE--KGDLTCEICHEPYKHGYTALPR 119


>04_04_1098 +
           30876785-30876835,30876846-30877171,30877396-30877418,
           30877687-30879392
          Length = 701

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 2   HEGQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATTRSSAY 130
           H+      S HKNA C+K  R  S+      H +    +SS +
Sbjct: 290 HDTDDDSESDHKNAKCKKSSRHDSESDSESDHKNARREKSSRH 332


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 146  NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 33
            ++LC C  C E  H  C  E ++      Q+C +  FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038


>03_05_0351 -
           23382786-23382821,23383373-23383634,23384369-23385675,
           23385776-23386290,23386379-23386741,23386916-23387284,
           23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 11  QSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 115
           +S+H ++H      + D+PC+Q   L+    C+++
Sbjct: 229 RSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263


>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
          Length = 603

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 238 LAQRQLE*LDPERVLERYSVPSSLLMPGTPPLNNSCSHMPSWVSPCLRLWVSSV 399
           +A R L    P RV  R+     +L+ G P   +     P W     R W ++V
Sbjct: 66  VAVRNLLAASPARVARRFPAARRVLLKGRPRFADFNLLPPGWAGADFRPWAAAV 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,117
Number of Sequences: 37544
Number of extensions: 326094
Number of successful extensions: 942
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)