Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D04
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    77   1e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    77   1e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    77   1e-14
Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    28   6.1  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    27   8.1  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      27   8.1  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      27   8.1  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    27   8.1  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 39/70 (55%), Positives = 42/70 (60%)
 Frame = +3

Query: 171 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAYARNPSLKQQLFS 350
           A R   TT   KDIDSAAK+                    FG+L+I YARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 351 YAILGFALSE 380
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 39/70 (55%), Positives = 42/70 (60%)
 Frame = +3

Query: 171 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAYARNPSLKQQLFS 350
           A R   TT   KDIDSAAK+                    FG+L+I YARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 351 YAILGFALSE 380
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 39/70 (55%), Positives = 42/70 (60%)
 Frame = +3

Query: 171 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIAYARNPSLKQQLFS 350
           A R   TT   KDIDSAAK+                    FG+L+I YARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 351 YAILGFALSE 380
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical
           protein F13E6.3 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 137 CVCRHCCEWSHKSCV 93
           C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250


>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 436 LSIILRTLQLPSYIMRFQCYYYLEWTAVESNVWKPHPLVMLGLMCKCVI 582
           +S+I+  + +P        Y YL W   +S V+    LV+  ++C  ++
Sbjct: 179 ISLIVTVIGIPDKCTNIYLYEYLTWDYSDSCVFLLADLVLYWIICLAIV 227


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 200 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 51
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 200 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 51
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
            protein.
          Length = 1173

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 131  CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTD 9
            C++C   +HK  VA+ S P CR   + G+    VL    TD
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTD 1130


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 131  CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTD 9
            C++C   +HK  VA+ S P CR   + G+    VL    TD
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTD 1130


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 200 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 51
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 311 SNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCV 132
           SN       S++ SGS+ +N      N + +     G  GG  G+        +   +  
Sbjct: 132 SNTNNLSSSSHSMSGSNNNNSNNNVVNNYLTVYGNNGSSGGGSGSGGGSGPGADSPRIHC 191

Query: 131 CRHCCEWSH 105
           CR CC +SH
Sbjct: 192 CRPCCPYSH 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,735,981
Number of Sequences: 27780
Number of extensions: 274642
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)