Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D03
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 56 4e-09
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 50 2e-07
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 50 2e-07
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 48 6e-07
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 43 3e-05
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 42 4e-05
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 42 4e-05
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 42 5e-05
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 41 9e-05
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 41 1e-04
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 41 1e-04
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 2e-04
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 40 3e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 3e-04
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 38 0.001
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 37 0.001
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.003
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.003
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.004
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 35 0.006
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 35 0.007
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 34 0.013
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.013
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 34 0.013
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 33 0.023
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 32 0.052
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.091
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 31 0.12
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 30 0.16
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 30 0.16
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 28 0.64
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 28 0.85
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 0.85
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 28 0.85
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 0.85
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 1.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.0
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 6.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.0
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 55.6 bits (128), Expect = 4e-09
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = +1
Query: 205 ILVSDMHILCTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSKSCPQCRNKVTE 372
+L ++ H +C IC D++ ++T CGH++ CL W++ S SCP C+ K+ +
Sbjct: 1083 VLKAESHQICIICRDIIKQG---FITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNK 1135
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 50.0 bits (114), Expect = 2e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 220 MHILCTICSDLVDPAENIYVTK--CGHIFHHHCLAQWIERSKSCPQCRNKVTERCMFRLF 393
M + C IC D ++ + TK CGHIF +CL +W+E +CP CR +V +
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPHETVGSAH 162
Query: 394 PTV 402
P +
Sbjct: 163 PPI 165
Score = 28.3 bits (60), Expect = 0.64
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +1
Query: 250 LVDPAENIYVTKCGHIFHHHCLA-------QWIERSKSCPQCRNK 363
+ DP + +CGH H C Q E CP+CRN+
Sbjct: 694 ICDPNDRFVHFECGHSVHERCQQSTSNSENQMDEEIGECPKCRNE 738
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 49.6 bits (113), Expect = 2e-07
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSKSCPQCRNKV 366
C IC++ + + + T CGH + + CL W++ SKSCP CR K+
Sbjct: 85 CPICTEAL---QRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 48.4 bits (110), Expect = 6e-07
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +1
Query: 286 CGHIFHHHCLAQWIERSKSCPQCRNKV 366
CGHI H HCL W+ER ++CP CR V
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSV 354
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 223 HILCTIC-SDLV-DPAENIYVTKCGHIFHHHCLAQWIERSKSCP--QCRNKVTERCMFRL 390
+I C C ++LV D ++I+ KCGH+F C + +++ CP CR ++T++ +F L
Sbjct: 144 NIACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPL 203
Query: 391 F 393
+
Sbjct: 204 Y 204
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 42.3 bits (95), Expect = 4e-05
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 268 NIYVTKCGHIFHHHCLAQWIERSKSCPQCR 357
N +T C H++H CL QW+E CP CR
Sbjct: 641 NYMLTPCHHLYHRQCLLQWMETRSICPVCR 670
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 42.3 bits (95), Expect = 4e-05
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 286 CGHIFHHHCLAQWIERSKSCPQCRNK 363
CGH FH+HCL W + +CP CR +
Sbjct: 56 CGHYFHNHCLESWCRVANTCPLCRTE 81
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 41.9 bits (94), Expect = 5e-05
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSKSCPQCRNKVTERCMFRLFPTVSND 411
CTIC ++ +++ C H FH +C+ W+ + +C CR V R S D
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQR--NNTSTD 453
Query: 412 ATGGED 429
+ G +
Sbjct: 454 SANGHN 459
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 41.1 bits (92), Expect = 9e-05
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +1
Query: 121 FDKRNKYFDVLQNPC*ILSR--NKAPINLSILVSDMHILCTICSDLVDPAENIYVTKCGH 294
+D R + F+ +NP + + P ++ S + C +D EN+ T CGH
Sbjct: 164 YDPRKQKFEQGKNPSTTNAEIEKEEPSKKQVVPSSQRLADYKCVICLDSPENLSCTPCGH 223
Query: 295 IFHHHCLAQWI---ERSKSCPQCRNKV 366
IF + C+ + ++ CP CR KV
Sbjct: 224 IFCNFCILSALGTTAATQKCPVCRRKV 250
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVT-KCGHIFHHHCLAQWIERSKS--------CPQCRNKVTERCMF 384
C++C+D ++P+ +I+ C H+FH C+ +W + S CP C++ TE +
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSNQTETSLH 256
Query: 385 RL 390
L
Sbjct: 257 YL 258
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 40.7 bits (91), Expect = 1e-04
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWI-ERSKSCPQCRNKV 366
C IC + + + C H FH C+A+WI + +CP C +V
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 39.9 bits (89), Expect = 2e-04
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 232 CTIC-SDLVDPAENIYVTKCGHIFHHHCLAQWIERSK-SCPQCRNK 363
C +C S+ E + +C H FH C+ QW+ S+ SCP CR K
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTK 570
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 39.5 bits (88), Expect = 3e-04
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 241 CSDLVDPAENIYVT--KCGHIFHHHCLAQWIERSKSCPQC 354
C P +N + KC HIFH HC+ W+ S S QC
Sbjct: 35 CPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQC 74
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 39.1 bits (87), Expect = 3e-04
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 CTICSDLVD-PAENIYVTKCGHIFHHHCLAQWIERSKSCPQCR 357
C++C + + PA T+CGHIF C+ W + CP CR
Sbjct: 256 CSLCMEFIHCPA----ATECGHIFCWSCINGWTSKKSECPLCR 294
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 37.5 bits (83), Expect = 0.001
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCG---HIFHHHCLAQWIERSKS--CPQCRNKVT 369
C IC ++ + +CG H FH CL +W + S S CP CR+ T
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSSFT 1608
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 37.1 bits (82), Expect = 0.001
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 202 SILVSDMHILCTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSK-SCPQC 354
S L+ D C IC + + V C H+FH C+ W+ K SCP C
Sbjct: 195 SCLLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLC 246
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 35.9 bits (79), Expect = 0.003
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHI-FHHHCLAQWIERSKSCPQCRNKVTERCMF 384
C IC L ++ CGH F + C+ +W+++S +CP C+ V C+F
Sbjct: 21 CVIC--LQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHVD--CVF 68
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 CTICSDLV-DPAENIYVTKCGHIFHHHCLAQWIERSKSCPQCR 357
C IC ++ DP V+ CGH F CL Q + +S CP CR
Sbjct: 169 CQICFGMLYDPV----VSPCGHTFCGPCLMQALTQSPQCPTCR 207
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVT-KCGHIFHHHCLAQWIERSKSCPQCR 357
C +C + +D + +T C H FH CL +W + SCP CR
Sbjct: 208 CVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCR 248
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 35.1 bits (77), Expect = 0.006
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 211 VSDMHILCTICSDLVDPAE-NIYVTKCGHIFHHHCLAQWIERSKSCP 348
+ D+ I C +D E + C H FH HC+++W+ CP
Sbjct: 48 IMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCP 94
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 34.7 bits (76), Expect = 0.007
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 232 CTICSD-LVDPAENIYVTKCGHIFHHHCLAQWIERSKSCPQC-RNKVTERCMFRL 390
C IC + + + E + C H H C ++I + CP C + + +FR+
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINVNSLFRI 325
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 33.9 bits (74), Expect = 0.013
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 229 LCTICSDLV-DPAENIYVTKCGHIFHHHCLAQWIERSKSCPQCRNKVTERCMFRLFPTVS 405
LC I ++ D + Y+ CGH+F + L Q+ E K C QC E+ + + P
Sbjct: 104 LCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGE--KMCFQCNQVYEEKDVIPINP--- 158
Query: 406 NDATGGEDAATLQSRLDDAQL 468
E TL RL D L
Sbjct: 159 ----NAEQLKTLSKRLLDLAL 175
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 33.9 bits (74), Expect = 0.013
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 286 CGHIFHHHCLAQWIER-SKSCPQCR 357
C H FH C+ QW+ + SCP CR
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPLCR 809
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 33.9 bits (74), Expect = 0.013
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 232 CTICSDLVDPAENIY-VTKCGHIFHHHCLAQW-IERSKSCPQCRNKVT 369
CTIC +Y C HIFH C+ + ++ S CP C+ VT
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVT 545
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.1 bits (72), Expect = 0.023
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSK---SCPQCR 357
C IC V P + ++V C H +H+ C+ + S SC CR
Sbjct: 192 CCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICR 236
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.9 bits (69), Expect = 0.052
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +1
Query: 217 DMHILCTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSKSCPQCR 357
D + C IC + +T C H F C+ ++ CP CR
Sbjct: 24 DSSLRCLICHEYFRAP---LITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.1 bits (67), Expect = 0.091
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 229 LCTICSDLVDPAENI---YVTKCGHIFHHHCLAQWIE--RSKSCPQCRNKV 366
LC +C D I Y T CGH + + C+ ++ + SCP C++++
Sbjct: 191 LCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 30.7 bits (66), Expect = 0.12
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIE-RSKSCPQC 354
C++C+ ++ + CGH F +C+ + E ++ +CPQC
Sbjct: 639 CSVCN--FSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 30.3 bits (65), Expect = 0.16
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 172 LSRNKAPINLSILVSDMHILCTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSK-SCP 348
L+ K P +++ +D +C IC + + +N V G +F + C+ W++R CP
Sbjct: 240 LAPPKLPFEINVSTTD---ICKICGEKI---KNPAVLSTGFVFCYPCIQVWLQRHPFKCP 293
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 30.3 bits (65), Expect = 0.16
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSKS-CPQCRNK-VTERC 378
C++C D+V AE + + CGH CL I S+ Q N+ ++ +C
Sbjct: 746 CSLCMDVV--AELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKC 794
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 0.64
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQW 324
C +C D + + +T+CGH+ CL +
Sbjct: 174 CNVCFDEFNGTDCFQLTRCGHVSCQSCLRDY 204
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.9 bits (59), Expect = 0.85
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 271 IYVTKCGHIFHHHCLAQW 324
+Y CGHI H CL W
Sbjct: 801 VYPPVCGHIGHESCLRSW 818
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 0.85
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 223 HILCTICSDLVDPAENIYVTKCGHIFHHHCLAQWIE-----RSKSCPQC 354
+I+C IC ++ A++ ++C H F C+ ++I + +CP C
Sbjct: 708 NIVCKICDEV---AQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSC 753
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.85
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 217 DMHILCTICS-DLVDPAENIYVTKCGHIFHHHCLAQWIERSKSCPQC 354
D+ +C IC D P T CGH F C ++ +C QC
Sbjct: 249 DIPFVCLICKKDYRSPI----ATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 27.9 bits (59), Expect = 0.85
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSK--SCPQCRNK 363
C ICS++ + C H+F HCL +++ K CP CR K
Sbjct: 360 CAICSNVAYKPVRL---GCSHVFCLHCLI-ILQKQKVDFCPLCRAK 401
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +1
Query: 232 CTICSDLVDPAENIYVTKCGHIFHHHCLAQWIERSKS-------CPQCRNKVTERCMFRL 390
C IC + +P +N + C H CL++ I+ K C CR E+ +++
Sbjct: 877 CPICCN--EPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKP 934
Query: 391 FPTVSNDAT 417
F V N+ T
Sbjct: 935 F-FVKNNGT 942
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +1
Query: 286 CGHIFHHHCLAQWIERSKSCPQ-CRNKVTERCMFR 387
C H+ H C +W S Q C + +C F+
Sbjct: 1282 CLHVMHEDCYKEWFSNGDSISQSCSSGCGCKCQFQ 1316
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.0 bits (52), Expect = 6.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Frame = +1
Query: 229 LCTICSDLVDPAENIY-VTKC-GHI--FHHHCLAQWIERSKS--CPQCRNK 363
+C +C P ++ KC G I H CL +W+ SK C C+ K
Sbjct: 7 ICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAK 57
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 378 TSLCHFITTLWTRL*SLYPLRQAMMMEYMTTFGHINVFS 262
T+ +ITTL+ R LYPL + ++Y ++ S
Sbjct: 285 TAELQYITTLYERAIVLYPLIPELWLQYTAWLSKVDFSS 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,017
Number of Sequences: 5004
Number of extensions: 37782
Number of successful extensions: 141
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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