Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D02
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.7  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    24   8.8  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    24   8.8  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -3

Query: 179 NIQYYFRNY---RLYILLE-IYEFENLHIFKVYIYIFVILGIMNYHASAH 42
           N+ + F N    R ++L   +  F +L+IF V   IFV+L  M  ++ +H
Sbjct: 282 NVAFTFSNTKGPRNFVLENHLVRFSSLYIFIVLSQIFVLLRQMRINSPSH 331


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 YIYLTRFIYKNNYNDKYYLWDVLIIRGII 260
           Y + T+ ++  +++ KY  W V+   GI+
Sbjct: 198 YAFTTKSLFVGHFDYKYLRWQVIDTPGIL 226


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 255 YPLLLKHPIDNIYH 214
           YP +LK+ +D++YH
Sbjct: 101 YPAILKNALDHLYH 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,198
Number of Sequences: 5004
Number of extensions: 33171
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)