Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D02
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    27   4.4  
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 153 IVSEIILYIYLTRFIYKNNYNDKYYLWDVLIIRGII 260
           I++ +ILY+ L R IY+      YY WD L++   +
Sbjct: 243 IITYLILYL-LYRTIYEAGGVFMYYQWDALLLESTV 277


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 116 NLHIFKVYIYIFVILGIMNY 57
           N HI+K+  Y++VIL I N+
Sbjct: 156 NTHIYKILAYLYVILIIKNF 175


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 289 YVLFALYYIFNHFLLILKCKF*NVFPKK 372
           Y LFAL+YIF   ++I+  +F   F +K
Sbjct: 499 YTLFALFYIFVSTIIIVTIRFVYKFTRK 526


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 174 YIYLTRFIYKNNYNDKY 224
           +IY  RF+Y  NYND +
Sbjct: 430 FIYTLRFMYNYNYNDDF 446


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 289 YVLFALYYIFNHFL 330
           Y++FALY IFNH L
Sbjct: 20  YMIFALYKIFNHHL 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,730,860
Number of Sequences: 27780
Number of extensions: 172404
Number of successful extensions: 307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)