Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D01
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305...    29   1.7  
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614...    29   2.2  
02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131     29   2.9  
07_03_0764 + 21335410-21335690,21335840-21336698                       28   5.1  
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793...    27   8.9  

>03_01_0392 +
           3051469-3051876,3052414-3052832,3053992-3054061,
           3054923-3055016,3056587-3056907,3057298-3057403,
           3058807-3058887,3059336-3059402,3059715-3060239,
           3060328-3060553,3060628-3060967,3061311-3061659,
           3061755-3062357
          Length = 1202

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +3

Query: 300 RKRIDACLAQPFRSGLTHVPVTNWGNSCTRFDSTTHTACVQGRPSSITCFCSRV*LSW 473
           +K+ DAC A  F + L   P+ N    C   +   H  C+    S + C C  +   W
Sbjct: 266 KKQKDACTAPRFENIL--FPLWNILKDCFNCEEQAHGGCIDDFLSHLMCCCCALVQEW 321


>03_02_0173 +
           6138406-6138628,6139769-6139857,6139922-6140608,
           6140682-6140834,6140922-6141290
          Length = 506

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 107 LSGGIARDYCKQHNKIMTDNTATEIKEKKYHF 12
           + GGIARDY K+ ++I+  ++ T +K+ +  F
Sbjct: 103 MEGGIARDYNKKVDRILKKHSGTGMKKFEIEF 134


>02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131
          Length = 486

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 437 RRRSSLYTCSMCRRVKASA*VSPVGDW 357
           RRR   Y   + RR  A+A  +P+GDW
Sbjct: 209 RRRQGTYALDIARRRPAAAAWTPLGDW 235


>07_03_0764 + 21335410-21335690,21335840-21336698
          Length = 379

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 430 GLPCTHAVCVVESKRVHEFPQ 368
           G+PC H + V+ S R+++ P+
Sbjct: 199 GIPCRHVILVLRSARLNQLPE 219


>11_06_0470 +
           23977394-23977503,23977755-23977922,23978724-23979367,
           23979584-23979823,23980175-23980296,23980397-23981080
          Length = 655

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 427 LPCTHAVCVVESKRVHEFPQLVTGTCVRPLRKGC 326
           +PC HA+C++    VH+ P       VR  +K C
Sbjct: 421 IPCCHALCLMIHSGVHKIPD--PHIMVRWTKKAC 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,951,364
Number of Sequences: 37544
Number of extensions: 216751
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)