Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D01
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z78540-1|CAB01736.1|  409|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U41026-2|AAM51523.1|  295|Caenorhabditis elegans Hypothetical
           protein C28G1.6 protein.
          Length = 295

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 472 QESYTLEQKQVIEEGLPCTHAVCVVESKRVHEFPQLVTGTCVRPL 338
           +ESY  E +  I + L C H +C V + ++ E P++   TC +P+
Sbjct: 10  EESYRSESR--IPKNLNCGHVICPVCASKLFENPEVKCPTCRQPI 52


>Z78540-1|CAB01736.1|  409|Caenorhabditis elegans Hypothetical
           protein C33G3.3 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 25  FSLISVAVLSVIILLCCLQ*SRAIPP 102
           F+LIS+   + II+ CC+Q  R +PP
Sbjct: 314 FNLISIT--TSIIIFCCMQVKRTLPP 337


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
           protein ZC123.3 protein.
          Length = 1623

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 294 IGRKRIDACLAQPFRSGLTHVPVTNWGNSCTRFDSTTHTACVQGRPSSI 440
           + R    +C  +P+R  L     T  GN      S  H   VQ  P+SI
Sbjct: 144 LARGETYSCGYKPYRCDLCRYSTTTKGNLSIHMQSDKHLHAVQELPNSI 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,333
Number of Sequences: 27780
Number of extensions: 201083
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)