Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C24
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.26
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 29 0.26
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 29 0.34
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 29 0.34
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 1.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 1.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 1.8
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 2.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 3.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 4.2
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 25 4.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 5.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 5.6
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 7.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 7.3
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 25 7.3
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 7.3
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 24 9.7
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.26
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 449 IRIKVLPF*DLLLLGEYLDFSLLLGDI 369
+ I + F D+LL G YL+FSL+LG +
Sbjct: 298 LSIPLALFFDILLKGHYLNFSLILGSL 324
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.26
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +1
Query: 205 DSDFSPP-RRTESPRTKSKGERKYDSDISPPRKQENKPKERVRKPSRWGDFEKTNDISPN 381
D D PP SP + +++ ++ R+Q K +ERV W FE +
Sbjct: 553 DDDEEPPNEEVASPTAVVRARNVFENALAHLRQQGLK-EERVVLLEAWKQFEAMHGTEDT 611
Query: 382 RSEKSRYSP----KRRRSQNGN 435
R S P KRRR ++G+
Sbjct: 612 RKHVSSLMPQVVKKRRRLEDGS 633
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 29.1 bits (62), Expect = 0.34
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 13 DGFNSKLQIEEI---QKDVEESKKENELIFGKMYSDSEDEKNCDSDVS 147
D N KL+++++ Q+ VEE K + +LIF + +S E D DVS
Sbjct: 722 DKKNHKLKMDKVASLQELVEEPKVQPDLIFEEKAFESASEAESDVDVS 769
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 29.1 bits (62), Expect = 0.34
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 232 TESPRTKSKGERKYDSDISPPRKQENKPKERVRKPS 339
T + S+ K D + S P K+E KP KPS
Sbjct: 374 TSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPS 409
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 16 GFNSKLQIEEIQK--DVEESKKENELIFGKMYSDSEDEK 126
GFN K Q +E++K EE +KEN Y + E+EK
Sbjct: 298 GFNKK-QSKELEKYRQEEEKRKENGDDLSDNYEEEEEEK 335
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.1 bits (57), Expect = 1.4
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +1
Query: 217 SPPRRTESPRTKSKGERK-----YDSDISP--PRKQENKPKERVRKPSRWGDFEKTNDIS 375
+PP R + P+ KG+ K D+S P ++P + R S++G+ +++
Sbjct: 521 NPPLRDQEPQRGDKGDIKSAINNSTEDLSKKHPALHSSRPSDS-RSRSKFGNDYQSHS-K 578
Query: 376 PNRSEKSRYSPKRRRSQNGNT 438
N K+ + PKRRR N +T
Sbjct: 579 HNLFRKNSF-PKRRRLSNSDT 598
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 1.8
Identities = 23/105 (21%), Positives = 42/105 (40%)
Frame = +1
Query: 25 SKLQIEEIQKDVEESKKENELIFGKMYSDSEDEKNCDSDVSPRQHXXXXXXXXXXXXXXX 204
S + E +++ E + E E+ K + SED ++ DS+ S +
Sbjct: 49 SSSESESSEEESESEESEVEVPKKKAVAASEDSES-DSESSEEEEETESEEDSEVSD--- 104
Query: 205 DSDFSPPRRTESPRTKSKGERKYDSDISPPRKQENKPKERVRKPS 339
+S+ +ES E +S+ S P KP++ KP+
Sbjct: 105 ESESESESESESEEESESEEESDESERSGPSSFLKKPEKEEAKPA 149
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 22 NSKLQIEEIQKDVEESKKENELIFGKMYSDSEDEKNCD 135
N +EE +KD + S+K+++ + G + S E ++ D
Sbjct: 740 NENSNVEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTD 777
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 2.4
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +1
Query: 217 SPPRRTESPRTKSKGERKYDSDISPPRKQENK----PKERVRKPSRWGDFEKTNDIS-PN 381
SP RR K + + + P+K + P RV+ P+ K+ + PN
Sbjct: 171 SPKRRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPT--SILSKSPPLKVPN 228
Query: 382 RSEKSRYSPKRRRSQNGNTLILMCH 456
++ S +SP R + + T +++ H
Sbjct: 229 KNRSSTFSPLRTPTSSSKTFVIVDH 253
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.8 bits (54), Expect = 3.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 322 RVRKPSRWG-DFEKTNDISPNRSEKSRYSPKRRRSQNGNTLILM 450
R+R R G E+ +++ PNR + SR+ +R + +N T LM
Sbjct: 239 RLRSRLRMGLSSEQLSEMFPNRMDFSRFQIERLKERNDLTQRLM 282
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 4.2
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 5/139 (3%)
Frame = +1
Query: 25 SKLQIEEIQKDVEESKKENELIFGKMYSDSEDEKNCDSDVSPRQHXXXXXXXXXXXXXXX 204
S+ + E K +E+ GK D ++ + + RQ+
Sbjct: 1494 SRERSSEANHRTSNDNKRDEVTEGK---DKNKRQDISGESNSRQNNAISRAGRSNGSNRG 1550
Query: 205 DSDFSPPRRTESPRTKSKGERKYDSDISPPRKQENKPKERVRKPSRWGD-----FEKTND 369
+ R + +K R DS SP +E +E R+ +R D + D
Sbjct: 1551 NDSRDADGRRSTHYASNKRPRSSDSQ-SPSNLREEDERENSRRRARQDDRRDRDSRQQRD 1609
Query: 370 ISPNRSEKSRYSPKRRRSQ 426
+R+ +S KRR+ Q
Sbjct: 1610 RPRDRTSRSAREEKRRKIQ 1628
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 22 NSKLQIEEIQKDVEESKKENELIFGKMYSDSEDEKNCDSDVSPRQH 159
N ++Q E +KDV+ + ENE I S S K C + + +
Sbjct: 104 NLEVQQTEKEKDVDSASAENESI----NSSSSSSKECSTQTQSKHY 145
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 232 TESPRTKSKGERKYDSDISPPRKQENKPKERVRKPS 339
T S + S+ +R+Y+SD S +E+K ++R S
Sbjct: 360 TGSGQRASREKRQYESDASESEAEESKTSIKLRGAS 395
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -2
Query: 342 STRLPDPFLRFIFLF---SWWRNI 280
ST L DP+LR IF + S WR++
Sbjct: 617 STELEDPYLRAIFAYVSNSDWRDV 640
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 7.3
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +1
Query: 226 RRTESPRTKSKGERKYDSDISPPRKQENKPKER---VRKPSRWGDFEK-TNDISPNRSEK 393
++ E R K + E+K R+++ K KER ++K + D EK + E+
Sbjct: 639 KKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEE 698
Query: 394 SRYSPKRRRSQ 426
R +R+R +
Sbjct: 699 KRILEERKRRE 709
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 333 LPDPFLRFIFLFSWWRNIRIIFSFPFAFC 247
L D L F+ + W+ I I+S +AFC
Sbjct: 566 LTDLSLFFLDTYLWYILISTIYSLAYAFC 594
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 22 NSKLQIEEIQKDVEESKKENELIFGKMYSDSEDEKN 129
+ +LQ+E + DVE +K EN +EDE N
Sbjct: 214 DKRLQLEMAKLDVESAKPENLEHCKSAVRSAEDELN 249
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 7.3
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +1
Query: 13 DGFNSKLQIEEIQKDVEESKKENELIFGKMYSDSEDEKNCDSDVSPRQH 159
DGF S L +EE + DVE S E SDS++E DSD H
Sbjct: 345 DGF-SDLDVEEDEDDVESSSNEE-------VSDSDEE---DSDSKHTAH 382
>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -2
Query: 363 CFF--KITPSTRLPDPFLRFIF 304
CF K+ S R P PFLR++F
Sbjct: 36 CFLYPKLFDSQRSPSPFLRWLF 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.128 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,634
Number of Sequences: 5004
Number of extensions: 24063
Number of successful extensions: 103
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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