Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C23
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    29   0.69 
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   2.1  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   2.8  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    27   2.8  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    26   3.7  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   3.7  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   6.4  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.4  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   6.4  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   6.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    25   8.5  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   8.5  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 399 TRSTETPLPQNKYVLLCATNKLLVLEHLAVNNGDSTGPL 283
           T  T+T LP+N YVL   T+ +L  E   ++   S  P+
Sbjct: 351 TLDTQTQLPENTYVLKEETSMVLYDEQCKISESPSYSPV 389


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 37  VKNETDLKFLYESHESFVPL--PTYFILAGMCMEAP 138
           ++N +DL+ LYE+  + +PL  P+YF    +C+  P
Sbjct: 177 IENNSDLETLYENIHNVLPLITPSYFFTL-LCLILP 211


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -1

Query: 396 RSTETPLPQNKYVLLCATNKLLVLEHLAVNNGDSTGPLVEYIDDIASCREGSFRARK 226
           +++E  LPQ+ YV+  A N + ++  +A++NG+      E  DD+   +   ++ RK
Sbjct: 557 QTSEWKLPQDVYVVQSAINDMQIV--VALSNGELV--YFEMSDDVEGGQLNEYQERK 609


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 580 CRIGFL*PLRRFANVW 533
           CR+GF  P+RR  N W
Sbjct: 103 CRLGFYEPIRRTLNTW 118


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 61  FLYESHESFVPLPTYFILAGMCMEAPIVATAMPPGKHADFTNILHGEQYIEFVGDF 228
           FL    +  VP P   +L G+C  A     + P   H D      G+ Y + + DF
Sbjct: 236 FLSGEKDEIVPPPQMVLLFGLCGSAKKKFHSFPKCTHND---TCLGDGYFQVIADF 288


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 456 HRIGRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKLLVLEHLAVNNGDST 292
           HR+GRT R    GN++L +       LP  +  L    +K + +E + V +G  T
Sbjct: 371 HRVGRTARYNRSGNALLLL-------LPSEEAFLKRLESKKIAVERINVKDGKKT 418


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 224 IFLARKDPSRHDAMSSIYSTRGPVLSPLLTARCSRTSSLFVAHNSTYLFWGRGVSVDR 397
           + LAR D  R+     +Y T+ P+L  +   +C R    + A     +   R +S+ +
Sbjct: 13  VSLARPDLPRNSP--DVYDTKIPILQAITAKKCQRFRGDWGAKRKLPILKNRHISIQK 68


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 427 PVREQRSYYYAVH-RN--PPAPEQICAVVCDK 341
           P R+ R     +H RN  PP PE +C+++ +K
Sbjct: 439 PDRDARKKIIEIHTRNWDPPVPEWLCSMLAEK 470


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 81   EFRTPTDLLHSRRHVYGGTDSRYSHAPGETR 173
            E+    D  H++  VYG TDS +   PG T+
Sbjct: 1103 EYINTLDFCHAKV-VYGDTDSLFVELPGATK 1132


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 309 NNGDSTGPLVEYIDDIASCREGSFRARKITDKLY 208
           NNG       EY  +++S  E +FRA  +T +LY
Sbjct: 293 NNGRVWMTSQEYDTEVSSTDERNFRANDVTLQLY 326


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 118 RRE*SKSVGVRNSHGSRIETSNQSRF 41
           R+   K +GV +   SRI TS++SRF
Sbjct: 162 RQNRGKFIGVGSDGDSRISTSSKSRF 187


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 GNTQTLLTFYTGSNT*SLSVIFLARKDPSR 253
           G    LL  YT SNT + S I L   DP++
Sbjct: 219 GVLSNLLKLYTNSNTVTSSRISLKHTDPTK 248


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 480 PGRSLQNVR*S*PTTYRSQTLANLRSGHKKPILH 581
           P  S  N   S P  Y S    N+  GH   ILH
Sbjct: 306 PSLSTNNTATSVPAPYSSAASVNVVPGHATTILH 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,933
Number of Sequences: 5004
Number of extensions: 63593
Number of successful extensions: 196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)