Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C23
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0151 - 21237677-21237704,21237759-21237829,21238101-212382... 71 7e-13
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 34 0.100
12_01_0741 + 6649988-6653065 32 0.40
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700... 31 0.53
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615... 31 0.70
07_03_0765 - 21341872-21342198,21342482-21342635,21342716-213429... 30 1.2
03_05_0501 - 24944533-24945507 30 1.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 30 1.6
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 29 3.8
01_06_0065 + 26107522-26107700,26110875-26111253 29 3.8
04_04_0887 + 29095087-29096166 28 5.0
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045... 28 5.0
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26... 28 5.0
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 28 6.6
10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128 28 6.6
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190 28 6.6
09_06_0127 + 21019266-21019670 28 6.6
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408 28 6.6
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936... 28 6.6
11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,648... 27 8.7
02_01_0384 - 2781362-2782299,2782320-2782428 27 8.7
01_03_0113 - 12647599-12648052,12648078-12648319 27 8.7
>09_06_0151 -
21237677-21237704,21237759-21237829,21238101-21238281,
21238369-21238441,21239033-21239072,21239818-21239890,
21240075-21240151,21241033-21241138,21241256-21241278,
21241369-21241440
Length = 247
Score = 70.9 bits (166), Expect = 7e-13
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 24/199 (12%)
Frame = +1
Query: 10 VYALGVGA---SVKNETDLKFLY--ESHESFVPLPTYFILAGMCMEAPIVATAMPPGKHA 174
+YALGVGA +E +L +Y + LPT+ L + + PG +
Sbjct: 36 LYALGVGACGADAIDEKELHLVYHRDGQPHIKALPTFASLFPF-KNSNGLGIVDVPGLNF 94
Query: 175 DFTNILHGEQYIEFVGDFPGTEGSFTTRCYVVDILDKGSSAVAIVNS--EVFQNKQLICR 348
D + +LHG+ YIE + + + + + DKG + + + + V + +++C
Sbjct: 95 DASLLLHGQHYIEIYKPIH-SRANVVNKTKIAGLHDKGKATILEIETTTHVKDSGEVLCM 153
Query: 349 TQQHIFVLGQGGFGGPRNS-------KNAVPVQDAPKRAPDAVLEQQTAEDQAA------ 489
+ I++ G GGF P N V P AP AV E QT + QA
Sbjct: 154 NRSTIYLRGAGGFSDPSRPYSYASYPTNQVSRISIPNSAPSAVYEDQTQQSQACCSFGML 213
Query: 490 ----LYRMSGDLNPLHIDP 534
LYR+SGD NPLH DP
Sbjct: 214 FYALLYRLSGDYNPLHSDP 232
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 33.9 bits (74), Expect = 0.100
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Frame = -2
Query: 479 SSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCPRTNMCCCVRQISCLFW---NTSLL 309
SS CC +ASG+ + +S + P + C ++S L W + LL
Sbjct: 273 SSISCCRFSASGSNVASSSVDGTVRIWTYDSSTPSSKNATIYCGSEVSALSWECRSDRLL 332
Query: 308 TMATALDPLSSISTT*HRVVKDPSVPGKSPT-NSMYCSPCRMLVKSA 171
+ TA + + + RVV D S P+ + CSP + SA
Sbjct: 333 LIGTANGGIKAWNADAKRVVCDLSTSKDFPSVLDLKCSPVEPVFVSA 379
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 429 VLYGNSVLTITRSTETPLPQNKYVLLCATNKLLVLEHLAVNNGDSTG-PLVEYIDDIASC 253
+L+ NS + I T QN YVL + NKL+V++ NN P + ++ +ASC
Sbjct: 460 LLHSNSFVGIVELTSYSKLQNLYVLNLSNNKLIVID--GENNSSLVSYPSISFL-RLASC 516
Query: 252 REGSF 238
SF
Sbjct: 517 SISSF 521
>04_01_0542 -
7005972-7007443,7008568-7008766,7008780-7008855,
7009615-7009925
Length = 685
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 382 GFGGPRNSKNAVPVQDAPKRAPDAVLEQQTAEDQAALYRMSGDLNPLHIDPK 537
G GG + AV AP + V+ + A + AA + G PLH +PK
Sbjct: 68 GTGGAAHGVAAVAAAPAPDATENEVVATKAANETAAKNKKRGKTPPLHRNPK 119
>05_02_0053 -
6152204-6152329,6152817-6152981,6154698-6154883,
6155055-6155078,6155649-6155822
Length = 224
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 428 TRLNVRPMRCSNNKPPRTRPLFTECPVILTHYISIPNVSEPAKW 559
+R N RP R + PPR R L V+ T + ++ + SE KW
Sbjct: 37 SRANPRPPRLAAPSPPRHRRLKDFIYVLATAHAAVSDKSEQPKW 80
>07_03_0765 -
21341872-21342198,21342482-21342635,21342716-21342953,
21343072-21343282,21343475-21343611,21347267-21348179
Length = 659
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 473 PRTRPLFTECPVILTHYISIPNVSEPAKW 559
P RPL + V+LT I +P++S PA W
Sbjct: 593 PADRPLMSAVNVMLTGTIRLPSLSRPAFW 621
>03_05_0501 - 24944533-24945507
Length = 324
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 343 CRTQQHIFVLGQGGFGGPRNSKNAVPVQDAPKRAPDAVLEQQTAEDQAALY 495
CR+Q+ GG GG + K V + AP++A + AED+AA Y
Sbjct: 44 CRSQEE---QPDGGGGGGGDDKENVSPEVAPRKAKKMRVSLGAAEDEAAAY 91
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 317 SLLTMATALDPLSSISTT*HRVVKDP-SVPGKSPTNSMYCSPCRMLVKSACFPGGMAVA 144
SL + + +P + RV + P S P P + C PC+ LVK C G M A
Sbjct: 563 SLASASAFAEPCEECNLPCQRVREPPCSHPCPLPCHLNDCPPCKALVKRPCHCGAMVHA 621
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 239 SVPGKSPTNSMYCSPCRMLVKSACFPGGMAVATIGASIHMPARM 108
+ P SPTNS PCR++ A F + + H+P +
Sbjct: 413 NTPDISPTNSPPPQPCRIITPDAAFNPTPQITSTEPHPHLPGEL 456
>01_06_0065 + 26107522-26107700,26110875-26111253
Length = 185
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 431 ASCTGTAFLLLRGPPKPPCPRTNMCC 354
++C +LLR PP P CP +CC
Sbjct: 6 SACLACCLVLLRHPPCP-CPAWRLCC 30
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 556 LRRFANVWDRYVVG*DHRTFCKERPGPRRFVVRAPHRAH 440
LR FA +WD G D RP PR+ P R H
Sbjct: 316 LRAFAEIWDEVFAGPDEPRHGPPRPPPRQRT--PPRRRH 352
>03_02_0766 -
11003746-11003902,11004037-11004281,11004379-11004585,
11004699-11004861,11005105-11005370
Length = 345
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 232 GTEGSFTTRCYVVDILDKGSSAVAIVN--SEVFQNKQLICRTQQHIFVLGQG 381
G E F T +D + G++ IV+ S +++ K +I T+ IFV G G
Sbjct: 56 GPEDEFKTVQSAIDAVPVGNTEWVIVHLRSGIYREKVMIPETKPFIFVRGNG 107
>02_01_0037 +
261405-261779,261880-262065,262185-262271,262341-262420,
262518-262599,262794-262814,263204-263249,263365-263483,
263685-263798,263885-263959,264068-264157,264604-264713,
264902-265160
Length = 547
Score = 28.3 bits (60), Expect = 5.0
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 254 HDAMSSIYSTRGPVLSPL--LTARCSRTSSLFVAHNSTYLFWGRGVSVDRVIVRTLFPYR 427
H + I++ P L+P L ARC + V + LFWG V +D +V+ L P R
Sbjct: 344 HRQAAVIHADDLPSLAPQSRLRARCFPANDTDVGLSGNSLFWGGLVRID--VVKAL-P-R 399
Query: 428 TRLN-VRPMRCSNNKPPRT 481
TRL P + N P T
Sbjct: 400 TRLTFYGPKKLKINMVPTT 418
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 360 VLLCATNKLLVLEHLAVNNGDSTGPLVEYIDDIASCREGSFRARKITDKL 211
++ + L L+HL+VNN + GPL + ++ +F K++ L
Sbjct: 438 MMASSLGNLTQLQHLSVNNNNLDGPLPASLGNLQRLVSATFSNNKLSGPL 487
>10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128
Length = 458
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 286 GSSAVAIVNSEVFQNKQLICRTQQHIFVLGQGGFG 390
GS + N ++F +L T+ + VLGQGGFG
Sbjct: 111 GSVLQKVENIKIFTKDELKKITKNNSEVLGQGGFG 145
>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
Length = 695
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 286 GSSAVAIVNSEVFQNKQLICRTQQHIFVLGQGGFG 390
GS + N ++F +L T+ + VLGQGGFG
Sbjct: 398 GSVLQKVDNVKIFSKDELKKITKNNSEVLGQGGFG 432
>09_06_0127 + 21019266-21019670
Length = 134
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 479 SSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCP 372
SS +T S A G+S T ++ + PP PP P
Sbjct: 46 SSTSTTGTTPSAAASGSSSTASSSRSVNAPPPPPTP 81
>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
Length = 332
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 286 GSSAVAIVNSEVFQNKQLICRTQQHIFVLGQGGFG 390
GS + N ++F +L T+ + VLGQGGFG
Sbjct: 13 GSILQKVDNVKIFSKDELKKITKNNSEVLGQGGFG 47
>06_03_0943 -
26191798-26192244,26192802-26192966,26193515-26193668,
26194153-26194346,26194494-26194695,26194899-26195103,
26195672-26195843
Length = 512
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 103 YFILAGMCMEAPIVATAMPPG-KHADFTNILHGEQYIEFVGDFPGTEGSFTTRCYVVDIL 279
Y+++ G P +A G ++ DFT + HG+ + V GT Y +
Sbjct: 417 YYVVPGYNKTGPALAQGAATGNRYPDFTRVNHGKYAVSDVRANIGTSNLIWDYFYTTAGV 476
Query: 280 DKGSSAVAIVN 312
G+ + AIV+
Sbjct: 477 SFGTYSPAIVS 487
>11_01_0776 +
6476743-6477539,6478658-6479481,6479803-6480790,
6482633-6483545
Length = 1173
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 359 TYLFWGRGVSVDRVIVRTLFPYRTRLNVRPMRC 457
++LF+G G+SVDR + P+ R P C
Sbjct: 628 SFLFYGIGISVDRSRTASSLPFSVRTLELPSIC 660
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 488 AAWSSAVCCSSTASGARLGAS 426
A+WSSA+C S ARL AS
Sbjct: 316 ASWSSAICLPSPQPSARLEAS 336
>01_03_0113 - 12647599-12648052,12648078-12648319
Length = 231
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 536 LGSICSGLRSPDIL*RAAWSSAVCCSSTAS 447
L ++ + L PD++ RAAW+SA + AS
Sbjct: 13 LVTVFTALEIPDLICRAAWASAATAMAPAS 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,059,753
Number of Sequences: 37544
Number of extensions: 501562
Number of successful extensions: 1488
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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