Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C23
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-4|AAA68358.1|  298|Caenorhabditis elegans Hypothetical pr...   144   6e-35
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    30   1.5  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    30   1.5  
AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical ...    29   1.9  
AL132904-5|CAC35837.2|  406|Caenorhabditis elegans Hypothetical ...    29   1.9  
AC006675-7|AAK84555.2|  409|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>U28943-4|AAA68358.1|  298|Caenorhabditis elegans Hypothetical
           protein E04F6.3 protein.
          Length = 298

 Score =  144 bits (348), Expect = 6e-35
 Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
 Frame = +1

Query: 10  VYALGVGASVKNETDLKFLYESHESFVPLPTYFILAGMCMEAPIVATAMP-PGKHADFTN 186
           +YALGVGA  K   DL ++YE+HE F  LP+Y +  G         T M  PG   D   
Sbjct: 25  IYALGVGARAKE--DLCYVYENHEDFKVLPSYIVAPGFQAH-----TLMDWPGVEFDLQR 77

Query: 187 ILHGEQYIEFVGDFPGTEGSFTTRCYVVDILDKGSSAVAIVNSEVF-QNKQLICRTQQHI 363
           +LHGEQYIE        EG   +   VVDILDKGS A+ + N   + +N + I   Q   
Sbjct: 78  VLHGEQYIEVYQPL-SAEGKLKSEARVVDILDKGSGALILGNVTTYDENGKKIAMQQFST 136

Query: 364 FVLGQGGFGGPRNSKNAVPVQDAPKRAPDAVLEQQTAEDQAALYRM-SGDLNPLHIDPK 537
           F  G G FGG R S + +     P RAPDAV+EQ+T  DQAALYR+ SGD+NPLH+DP+
Sbjct: 137 FQTGSGNFGGDRTSPHEIKAATVPDRAPDAVIEQKTTVDQAALYRLGSGDMNPLHVDPE 195


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 286 GSSAVAIVN--SEVFQNKQLICRTQQHIFVLGQGGFGGPRNSKNAVPVQDAPKRAPDAVL 459
           G + V I++  S+V+   + + + + + F    G    P+NSK  +PVQ       D VL
Sbjct: 255 GDNLVVIIDDRSDVWMYSEALIQIKPYRFFKEVGDINAPKNSKEQMPVQIEDDAHEDKVL 314

Query: 460 EQ 465
           E+
Sbjct: 315 EE 316


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 447 GRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKL 334
           G  ++ V + N+V  +   TE+ L QNKY++L  ++K+
Sbjct: 368 GHKWKEVRHDNTVTWLCSWTESVLGQNKYIMLNPSSKI 405


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 447 GRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKL 334
           G  ++ V + N+V  +   TE+ L QNKY++L  ++K+
Sbjct: 440 GHKWKEVRHDNTVTWLCSWTESVLGQNKYIMLNPSSKI 477


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 447 GRTFRRVLYGNSVLTITRSTETPLPQNKYVLLCATNKL 334
           G  ++ V + N+V  +   TE+ L QNKY++L  ++K+
Sbjct: 440 GHKWKEVRHDNTVTWLCSWTESVLGQNKYIMLNPSSKI 477


>AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9b protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 479 SSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCP 372
           SS+  CS  +  AR  ASC G       GPP PP P
Sbjct: 235 SSSPMCSPQSVAARASASCDG-----CNGPPPPPQP 265


>AL132904-5|CAC35837.2|  406|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9a protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 479 SSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCP 372
           SS+  CS  +  AR  ASC G       GPP PP P
Sbjct: 315 SSSPMCSPQSVAARASASCDG-----CNGPPPPPQP 345


>AC006675-7|AAK84555.2|  409|Caenorhabditis elegans Hypothetical
           protein M02H5.5 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -2

Query: 536 LGSICSGLRS-PDIL*RAAWSSAVCCSSTASGARLGA-SCTGTAFLLLRGPPK---PPCP 372
           + ++CS   S PD++   +    VC   TA G   GA +C   A    R        PC 
Sbjct: 1   MNALCSSSSSFPDLIVAVSEKCPVCWKHTAHGMHFGAFTCRACAAFFRRFATTKNLKPCK 60

Query: 371 RTNMC 357
           ++N+C
Sbjct: 61  KSNVC 65


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -2

Query: 464 CSSTASGARLGASCTGTA-FLLLRGPPKPPCPRTNMC 357
           C S+  G  +G SC       +   PP PPCP    C
Sbjct: 228 CGSSCGGCNMGCSCLPPPPSPVCMPPPPPPCPMPIPC 264


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 106 SKSVGVRNSHGSRIETSNQSRFSPTHRHQERKHL 5
           SK +   NS+ +R+E  N+   SP+H  +E  HL
Sbjct: 725 SKELAASNSNIARLERKNEKLKSPSHTPKEFGHL 758


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 353 CVRQISCLFWNTSLLTMATALDPLSSISTT*HRVVKDPSVPGKSPTNSMYCSPCRMLVK 177
           C R +S LF     +  +TA DP+ SIST    ++    + G++      CS  R+ V+
Sbjct: 3   CSRSVSLLFTLLVGVYASTATDPIDSISTQGADILNRAKLTGQT-VRQCSCSEQRVCVE 60


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 353 CVRQISCLFWNTSLLTMATALDPLSSISTT*HRVVKDPSVPGKSPTNSMYCSPCRMLVK 177
           C R +S LF     +  +TA DP+ SIST    ++    + G++      CS  R+ V+
Sbjct: 3   CSRSVSLLFTLLVGVYASTATDPIDSISTQGADILNRAKLTGQT-VRQCSCSEQRVCVE 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,859
Number of Sequences: 27780
Number of extensions: 392353
Number of successful extensions: 1078
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)