Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C23
(600 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 35 7e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 35 7e-04
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 29 0.046
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 26 0.32
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 25 0.75
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 25 0.75
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.75
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 24 0.99
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 24 0.99
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 24 0.99
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 24 0.99
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 24 1.3
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 1.7
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 23 1.7
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 1.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 1.7
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 1.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 1.7
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 1.7
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 1.7
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 1.7
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 1.7
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 1.7
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 1.7
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 4.0
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 22 5.3
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 9.2
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 7e-04
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = -2
Query: 491 RAAWSSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCPRTNMC 357
RAA + SS A GAR G SC L+ GPP PP P C
Sbjct: 412 RAASKEDLSPSSLADGARFGGSC------LIHGPPLPPLPLHTEC 450
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.7 bits (76), Expect = 7e-04
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = -2
Query: 491 RAAWSSAVCCSSTASGARLGASCTGTAFLLLRGPPKPPCPRTNMC 357
RAA + SS A GAR G SC L+ GPP PP P C
Sbjct: 412 RAASKEDLSPSSLADGARFGGSC------LIHGPPLPPLPLHTEC 450
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 28.7 bits (61), Expect = 0.046
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +1
Query: 229 PGTEGSFTTRCY--VVDILD-----KGSSAVAIVNSEVFQNKQLICRTQQHIFVL 372
PG +TR Y ++D+ + G VAIV++ +++Q +CR + H F L
Sbjct: 692 PGINNQTSTREYPRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHCFAL 746
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 25.8 bits (54), Expect = 0.32
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYSHAPGETRRLY*HSTRGAIHRVCR*FSWHGRILHDTM 260
++ T ++ L SR H + T SRYS +R R R + + ++L +
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRN-REYRKKDRRYEKLHNEKEKLLEERT 267
Query: 261 LCRRYTR 281
C+RY+R
Sbjct: 268 SCKRYSR 274
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.6 bits (51), Expect = 0.75
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L SR H + T SRYS
Sbjct: 201 EKSGNESKKYATSSNSLRSRTHGFQHTSSRYS 232
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.6 bits (51), Expect = 0.75
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L SR H + T SRYS
Sbjct: 201 EKSGNESKKYATSSNSLRSRTHGFQHTSSRYS 232
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.6 bits (51), Expect = 0.75
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L SR H + T SRYS
Sbjct: 201 EKSGNESKKYATSSNSLRSRTHDFQHTSSRYS 232
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S +E ++ T ++ L +R H + T SRYS
Sbjct: 190 EKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 221
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S +E ++ T ++ L +R H + T SRYS
Sbjct: 201 EKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 232
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S +E ++ T ++ L +R H + T SRYS
Sbjct: 201 EKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 232
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 24.2 bits (50), Expect = 0.99
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S +E ++ T ++ L +R H + T SRYS
Sbjct: 190 EKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 221
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.8 bits (49), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L +R H + T SRYS
Sbjct: 190 EKSENESKKYATSSNSLRNRTHGFQHTSSRYS 221
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 458 SNNKPPRTRPLFTECPVILTHYISIPNVSEP 550
S N+PPR FT ++L H I N P
Sbjct: 329 SKNQPPRGAADFTAQVIVLNHPGQISNGYTP 359
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 23.4 bits (48), Expect = 1.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 458 SNNKPPRTRPLFTECPVILTHYISIPNVSEP 550
S N+PPR FT ++L H I N P
Sbjct: 40 SKNQPPRGAADFTAQVIVLNHPGQISNGYTP 70
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L SR H + T SRYS
Sbjct: 198 KYATSSNSLRSRTHGFQHTSSRYS 221
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L SR H + T SRYS
Sbjct: 198 KYATSSNSLRSRTHGFQHTSSRYS 221
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L SR H + T SRYS
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSRYS 232
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L SR H + T SRYS
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSRYS 232
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L SR H + T SRYS
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSRYS 232
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 23.4 bits (48), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L +R H + T SRYS
Sbjct: 201 EKSGNESKKYATSSNSLRNRTHGFQHTSSRYS 232
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.4 bits (48), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L +R H + T SRYS
Sbjct: 206 EKSGNESKKYATSSNSLRNRTHGFQHTSSRYS 237
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 23.4 bits (48), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L +R H + T SRYS
Sbjct: 201 EKSGNESKKYATSSNSLRNRTHGFQHTSSRYS 232
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L SR H + T SRYS
Sbjct: 209 KYATSSNSLRSRTHGFQHTSSRYS 232
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 23.4 bits (48), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 57 EVSIREP*EFRTPTDLLHSRRHVYGGTDSRYS 152
E S E ++ T ++ L +R H + T SRYS
Sbjct: 201 EKSGNESKKYATSSNSLRNRTHGFQHTSSRYS 232
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 81 EFRTPTDLLHSRRHVYGGTDSRYS 152
++ T ++ L +R H + T SRYS
Sbjct: 209 KYATSSNSLRNRTHDFQHTSSRYS 232
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 458 SNNKPPRTRPLFTECPVILTHYISIPNVSEP 550
S N PP+ FT ++L H I N P
Sbjct: 329 SKNNPPKGAADFTAQVIVLNHPGQISNGYTP 359
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = -2
Query: 392 PPKPPCPRTNMCC 354
PP+PP P C
Sbjct: 180 PPEPPVPTVTSAC 192
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,179
Number of Sequences: 438
Number of extensions: 5116
Number of successful extensions: 32
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -