Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C22
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.3  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   3.1  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   3.1  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   4.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.2  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.5  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 110 SLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVVING-QHIFTFDG 262
           +L K +I  D  DLL  +    PRSIN + ++P  L    I+  ++ F++DG
Sbjct: 366 ALSKHIIFFDL-DLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDG 416


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 80  IPVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 208
           I +   +A  SLL+ L S   P +L  V   R  SI+PL+E P
Sbjct: 286 IEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIHPLNESP 328


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 181 SWSVGTNQSKQVGIVSRYQLFEQT 110
           +W+ G   SK++G V R  +F+QT
Sbjct: 507 NWNAGLLYSKRLGPVGRAMIFQQT 530


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 220 AKFSRHFVKWVDRSWSVGTNQSKQVGIV 137
           A FS H +  V R W+  TN SK++GI+
Sbjct: 262 AYFS-HDISNVPRDWNKVTNYSKRLGII 288


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 378 RTRAEPSFELKDNGQVTLNGAAHGFPVIEKDVFAFKQ 488
           R R     + K+ GQ TLN        +EK+V  FK+
Sbjct: 179 RKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 469 TYSRSNRPTDVSASALNTD*WPS 537
           T+++ + P+DVSAS LN    PS
Sbjct: 332 TFNQPSGPSDVSASFLNLQAMPS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,459
Number of Sequences: 5004
Number of extensions: 46823
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)