Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C22
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 30 1.0
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 28 4.1
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 28 4.1
03_02_0373 - 7865708-7866310,7869547-7870443 28 4.1
09_06_0217 + 21629666-21629921,21630691-21630878,21630979-216310... 28 5.5
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 27 7.2
03_06_0180 + 32175658-32178145,32178765-32178808 27 7.2
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 27 9.6
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 27 9.6
01_06_1372 + 36726129-36728240 27 9.6
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 38 GPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDY 142
G + + YLF PA +P GD W LLK +I+ ++
Sbjct: 192 GGSGLSKYLFPPAKMPKGGGD--WPLLKDMIAQNH 224
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 23 GYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL--TLVRTYRPRSI-NP 193
G GP SW + S A+ W AS LK L G P +V + +P + NP
Sbjct: 96 GIMGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANP 155
Query: 194 L 196
+
Sbjct: 156 I 156
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +2
Query: 56 SYLFSPASIPVWSGDASWSLLKQLISGDYP--------DLLTLVRTYRPRSINPLDEMPA 211
S L + A+ V GDA + L+SG++P + +P ++ +DE
Sbjct: 272 SSLAAAAASAVLCGDALHQIAFPLVSGEFPWTEAFNAVSIQLAALATKPSEVDAVDEAVG 331
Query: 212 KLRAVVING 238
KL++V+ NG
Sbjct: 332 KLKSVLDNG 340
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 64 VLSCEHPGMVWRRVMEFAQTADIWRLSRLA 153
+L EHPG+ WR + F+ TA++ RLA
Sbjct: 118 LLGLEHPGVRWRAIRRFS-TAELLAPRRLA 146
>09_06_0217 +
21629666-21629921,21630691-21630878,21630979-21631042,
21631150-21631232,21631627-21631710,21631811-21631963,
21632150-21632335,21632596-21632663,21632896-21632992
Length = 392
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 5 EASQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLK---QLISGDY 142
E + YAA TS T + +P+ +GD S+LK +LI+G +
Sbjct: 284 EVKDLLEYAAENNTSLTRIMLDNMVVPLGNGDIDVSMLKDAVELINGRF 332
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 35 SGPTSWTSYLFSPASI--PVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 208
S SW S + P+ ++ W LL+ +S D PDLL V+ P + + MP
Sbjct: 345 SSRISWFMGTVSAVQVADPIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMP 402
Query: 209 A 211
A
Sbjct: 403 A 403
>03_06_0180 + 32175658-32178145,32178765-32178808
Length = 843
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 276 KVKCLPSNVKM--CCP---LMTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDISCLSK 112
K KCL K+ P L+T ++G +G +D+ L + + KSG PD L
Sbjct: 294 KCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353
Query: 111 LHDASPDHTGMLAGE 67
L A D G G+
Sbjct: 354 LLPALTDLNGFNQGK 368
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 410 RQWTGDTEWSCPRLPCH*EG--RIRVQTD 490
R W T WSC R C G R+R+ T+
Sbjct: 51 RDWWWSTSWSCWRKACRKSGGDRLRILTE 79
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 119 KQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVV 229
++L++GD+ L L+++Y P +I+ L + KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>01_06_1372 + 36726129-36728240
Length = 703
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 249 KMCCPLMTTARSLA-GISSSGLIDRGL*VRTKVSKSG*SPDI 127
K C P + T +L G+ +G ID+ + T +++ G PDI
Sbjct: 609 KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,992
Number of Sequences: 37544
Number of extensions: 347215
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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