Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C22
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          31   0.40 
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    31   0.40 
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    30   1.2  
Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   4.9  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   8.6  
AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical...    27   8.6  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   8.6  

>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
 Frame = +2

Query: 11  SQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS- 184
           +Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P   
Sbjct: 324 AQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVKY 383

Query: 185 -INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 292
            ++   E  A+    ++     FT   KHL F   C+
Sbjct: 384 WLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
 Frame = +2

Query: 11  SQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS- 184
           +Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P   
Sbjct: 324 AQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVKY 383

Query: 185 -INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 292
            ++   E  A+    ++     FT   KHL F   C+
Sbjct: 384 WLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
 Frame = +2

Query: 11  SQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS- 184
           +Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P   
Sbjct: 324 AQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVKY 383

Query: 185 -INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 292
            ++   E  A+    ++     FT   KHL F   C+
Sbjct: 384 WLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 180 DRSTHLTKCLLNFALWSSTDSTFSRSTANT 269
           D+ TH+T   ++ AL SSTDST S+S   T
Sbjct: 850 DKETHVTTTPVSVALPSSTDSTQSKSAIPT 879


>Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical
           protein K10D11.2 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 143 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 262
           P  +TLV+TY    IN   PL+     L+ VV +GQ  FTF G
Sbjct: 297 PTDMTLVKTYTGLEINKAVPLNFQGDVLQFVVSSGQADFTFKG 339


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 170 YRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVL 301
           Y  R  N   +  A     +    H+ T+DG   T PG+  YVL
Sbjct: 837 YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVL 880


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 188 NPLDEMPAKLRAVVING---QHIFTFDGKHLTFPGQCRYV 298
           +PLD  P K+ + +IN    ++  TFDG+   F   CR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
           protein Y80D3A.2 protein.
          Length = 1467

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 146 DLLTLVRTYRPRSINPLDEMPAKLRAVVINGQHI-----FTFDGKHLTFPGQCRYVLIHD 310
           + +TL    RP  +  L+E P      VI  ++I     +T DG         +++ +HD
Sbjct: 415 ETITLHCERRPNQLTQLNEKPLFPTEKVIWDENIIPYENYTGDGVLALDKLNLQFLTLHD 474

Query: 311 YVDRNFTVLLQLQNGQPKALVLED 382
           Y+ RNF  L QL++       LED
Sbjct: 475 YLLRNFN-LFQLESTYEIRQDLED 497


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 360  GCPFCSCRSTVKFLST*SCINT*RHCPGKV---KCLPSNVKMCCPLM 229
            GCP C CRS  +FL+     N  R  P K    +C P  V  C P M
Sbjct: 1230 GCPICDCRSPCEFLNC-PAGNVCRMIPVKCTTPECRP--VAKCIPNM 1273


>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 143 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 262
           P + T+V+ Y    IN   PL+     L+ VV +G+  FTFDG
Sbjct: 298 PTVGTIVKNYTALEINKAVPLNFQGEVLQFVVSSGKADFTFDG 340


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 523 PYLEPRPIRPLVCLNANTSFSMT 455
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 523 PYLEPRPIRPLVCLNANTSFSMT 455
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 260 GKHLTFPGQCRYVLIHDYVD 319
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


>AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical
           protein Y48C3A.20 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 158 LVRTYRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVL 337
           LV   RP     L  +P K+R +    + + ++ GK  T     + ++  +  + NF+ L
Sbjct: 83  LVSRLRPDFNGTLASVPYKVRNIDGYLKKLGSYSGKRPTLSSDLQLMITFEQEESNFSDL 142

Query: 338 LQLQNGQP 361
             LQN  P
Sbjct: 143 QFLQNQFP 150


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 260 GKHLTFPGQCRYVLIHDYVD 319
           G H     QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,787
Number of Sequences: 27780
Number of extensions: 277123
Number of successful extensions: 764
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)