Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C20
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    25   5.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   9.0  

>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 377 RRLGWLSLRHVDFFVVFHFYQCRTSTSLLIVIVPFQLINYKLAMSLSY 520
           RRL WL L++ +   V H+ +  +  S  + + P +L+ +     +S+
Sbjct: 68  RRL-WLGLKYFEGKPVLHYIRAVSKPSRKVNLTPSELLQFAKGRKVSF 114


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 219 PGRRPTEPSEWPGGRSTRGASRYNIKPTTA 308
           PG R   P+   G +ST   SRYN +PT +
Sbjct: 509 PGSRNLFPTSNSGNQSTSSFSRYN-QPTVS 537


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 44  PIKGVHKGMRVRNRAHHHRSA 106
           PI+ +HKG   RNR  + R A
Sbjct: 5   PIRTLHKGKAARNRTPYDRIA 25


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 467 LLIKKWKCGTDKNETLQRNQR 405
           LL+ KW   T KN+   RN+R
Sbjct: 84  LLVTKWFASTLKNQYAARNER 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,718
Number of Sequences: 5004
Number of extensions: 21336
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)