Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C20
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0061 - 4812903-4812940,4813140-4813536 33 0.14
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 29 3.0
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 28 4.0
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 28 4.0
01_01_0868 - 6780919-6783207 28 4.0
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 5.2
01_07_0139 - 41385823-41386656 28 5.2
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 27 6.9
06_01_0071 + 592662-592973 27 9.1
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 27 9.1
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 33.1 bits (72), Expect = 0.14
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 367 SHWLWCQWWWLEACFSSALAAVVG 296
+ W W QWWWLEA + + VG
Sbjct: 39 TRWRWRQWWWLEATRRANSSTAVG 62
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 217 PAGSCVDADDGNHLLLDSSVPDRLRDVRRGSYDG-NYNCAAVVVRSVPDPHP 65
P GSC DAD L +D +V + R+ ++ + AA V S P P
Sbjct: 32 PGGSCPDADQLPPLKIDRAVFNESAGSRKQTFSRVRFGAAAAVAASPSSPSP 83
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -3
Query: 208 SCVDADDGNHLLLDSSVPDRLRDVRRGSYDGNYNCAAVVVRSVPDPHPLVHPLDWVEVHG 29
SC + G ++ D S PD L + G +D + + + + DP P HPL
Sbjct: 97 SCKRSYRGGYVWHDLSHPDDLL-LPTGPHDYVLKASLLHLHHLIDPPPRHHPLITSTSSS 155
Query: 28 ARHHLCPRA 2
A H L P A
Sbjct: 156 AHHSLPPHA 164
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 189 SSASTQLP-AGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAEEKQAS 335
++ S++ P A PG S PGGRS RG S P+T+A + A+
Sbjct: 90 AARSSRTPSAAPGGTSARGSSTPGGRSGRGTSPAR-APSTSAPSTSPTAT 138
>01_01_0868 - 6780919-6783207
Length = 762
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 222 GRRPTEPSEWPGGRSTRGASR 284
G RPTEP+EW G G SR
Sbjct: 298 GFRPTEPNEWELGHFGSGCSR 318
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 210 PAGPGRRPTEPSEWPGGRSTRGAS 281
P PGRR +P PGGR + A+
Sbjct: 164 PGSPGRRLAQPPPRPGGRLAQAAA 187
>01_07_0139 - 41385823-41386656
Length = 277
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 14 EVVSGAVDLHPIKGVHKGMRVRNRAHHHRSAVIISVVTS 130
E+ G+++LHPI+ G R A+H +A + +V S
Sbjct: 61 ELWCGSIELHPIRRCINGERTVRIANHDGAAPVTRIVGS 99
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 204 QLPAGPGRRPTEPSEWPGGRSTRGA 278
+LP P PS+W G R RGA
Sbjct: 7 RLPTWAAAAPPSPSDWDGRRPRRGA 31
>06_01_0071 + 592662-592973
Length = 103
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 8 RAEVVSGAVDLHPIKGVHKGMRVRNRAHHHRSAVIISV 121
+A V + ++LH K +H+ +++R H H + V
Sbjct: 49 KARVAAAKMELHQDKALHREEAIQHRLHKHGAGTTAGV 86
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 214 AGSCVDADDGNHLLLDSSVPDRLRD--VRRGSYDG 116
A S +D DDG HL SV DRL + V SYDG
Sbjct: 91 AVSDIDNDDGVHLGRKRSVRDRLGNNMVGSESYDG 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,448,857
Number of Sequences: 37544
Number of extensions: 181156
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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