Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C20
         (522 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF272349-1|AAL36980.1|  193|Homo sapiens quaking protein 3 protein.    31   3.2  
BC032659-1|AAH32659.1| 1191|Homo sapiens Similar to phospholipas...    30   5.7  
AY587847-1|AAS99556.1|  462|Homo sapiens unknown protein.              30   5.7  
AB023171-1|BAA76798.2| 1183|Homo sapiens KIAA0954 protein protein.     29   9.9  

>AF272349-1|AAL36980.1|  193|Homo sapiens quaking protein 3 protein.
          Length = 193

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = +3

Query: 195 ASTQLPAGPGRRPTEPSEWPGGRSTR--GASRYNIKPTTAAKAEEKQASNXXXXXXNQ*E 368
           A T+LP  P RRP E    PGGR  R  GA R   +     +A  +           + E
Sbjct: 47  AETRLP--PARRPREGRAEPGGRERRRLGARRARAESACGGRASARCRPPRGSAREPERE 104

Query: 369 PGLGGLAG 392
           P   G  G
Sbjct: 105 PARSGTPG 112


>BC032659-1|AAH32659.1| 1191|Homo sapiens Similar to phospholipase
           C, beta 3 (phosphatidylinositol-specific) protein.
          Length = 1191

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 253 GHSDGSVGRRPGPAGSCVDADDGNHLLLDSSVPDRLRDVRRGSYDGNYNCAAVV-VRSVP 77
           G   GSVG RP P  +   A  G H  L    P  +  +RRGS    ++   ++ V S P
Sbjct: 9   GPRQGSVGPRPAPGRAMAGAQPGVH-ALQLEPPTVVETLRRGSKFIKWDEEKLMTVVSGP 67

Query: 76  DP 71
           DP
Sbjct: 68  DP 69


>AY587847-1|AAS99556.1|  462|Homo sapiens unknown protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -3

Query: 235 VGRRPGPAGSCVDADDG--NHLLLDS--SVPDRLRDVRRGS 125
           +GRRPGPAGS  D++ G   H + D   SVP     ++R S
Sbjct: 369 LGRRPGPAGSSPDSEGGGAGHTVGDEPPSVPTAEDSLKRES 409


>AB023171-1|BAA76798.2| 1183|Homo sapiens KIAA0954 protein protein.
          Length = 1183

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 189  SSASTQLPAGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAEEKQAS 335
            +S +   P G G+    PS    GR+ RGA + ++ P     A+ + AS
Sbjct: 991  ASPAVPFPGGQGKAKNSPSLGFHGRARRGALQSSVGPAEPTWAQGQSAS 1039


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,748,027
Number of Sequences: 237096
Number of extensions: 897614
Number of successful extensions: 3120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3120
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)