Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C19
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    31   0.13 
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    27   1.6  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.7  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    25   8.6  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -2

Query: 600 SSSDPSAQW----STPSHMRSALTQNSRCLHLNSLHPCSGMGSLTAVITNLKPFASVPQL 433
           SSSD   Q     + P ++R  +T+      L     C G G LTA  T+LK  A+  Q 
Sbjct: 658 SSSDNKEQLCLLNTLPWNVRGVITETEEN-KLVYFESCDGKGILTAAHTSLKHPAAAYQK 716

Query: 432 SVTYLSVTKLLRVNRAP 382
              ++ V   LRV  AP
Sbjct: 717 DDNFILVNDHLRVTIAP 733


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 422 YVTDNWGTDANGFKLVITAVKDPI 493
           Y T NW T+ NG  ++I ++  P+
Sbjct: 94  YATRNWQTNENGIVIIIQSMSHPL 117


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 338 PAKVDLSCRNTKQQVGALFTRSNFVTL-KYVTDNWG 442
           P KV +SC++ K  +G  F R    +L  Y TD  G
Sbjct: 99  PTKVVVSCKSNKGSIGPRFVRELEGSLSSYPTDTLG 134


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 404 NFVTLKYVTDNWGTDANGFKLVITAVKDPIPEHGCKEFRCKQRE 535
           N    +YV  +W TD N  +  + +VKD + +    E   + ++
Sbjct: 138 NKTRTRYVLFSWRTDVNDIERKLKSVKDFLQDGNIVEIHVQNKK 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,621
Number of Sequences: 5004
Number of extensions: 40448
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)