Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C19
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823           29   2.9  
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    29   3.8  
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163...    29   3.8  
04_03_0376 + 15105874-15106230,15109207-15111573                       29   3.8  
03_02_0329 - 7498951-7498989,7499219-7499507,7499590-7499760,749...    29   3.8  
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142     28   5.1  
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610     27   8.9  

>07_01_0350 - 2541441-2541645,2541660-2541878,2542573-2542823
          Length = 224

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 13  RHSEPAPPRHEGERSAYAVHRDLLCCNPHQC 105
           R + P PP   G+  A  +H  LL  NPH C
Sbjct: 3   RRAHPPPPA-VGDGDAQLLHHPLLRLNPHDC 32


>09_06_0177 +
           21365314-21366100,21367451-21367578,21367715-21367870,
           21368006-21368196,21369392-21369434,21369537-21369627,
           21369859-21369935,21370278-21370366,21370474-21370657,
           21370885-21371138,21371465-21371567,21371646-21371977,
           21372060-21372504
          Length = 959

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 383 GALFTRSNFVTLK-YVTDNWGTDANGFKLVITAVKDPIPEHGCKEFRCKQREFC 541
           G L T   F  LK  V  +W  D + + L     + PI E  C E R K+ E+C
Sbjct: 310 GCLLTCPVFNNLKCLVFGDWCMDFDLYPLRCVLKQSPILEELCVELREKECEYC 363


>05_01_0217 +
           1630083-1630205,1630467-1630710,1631695-1632508,
           1632775-1632844,1633007-1633239,1633345-1633564
          Length = 567

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 420 LSVTKLLRVNRAPTCCLVLRHDRSTLAGVVA*APS*TYRWS 298
           LSV K L V   P CC++ R  ++  AG+ +   S  + W+
Sbjct: 240 LSVLKHLEVKEIPKCCVLQRLSKNAKAGLPSVRKSDLHVWT 280


>04_03_0376 + 15105874-15106230,15109207-15111573
          Length = 907

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +2

Query: 422 YVTDNWGTDANGFKLVITAVKDPIPEH---GCKEFRCKQREFCVSADLM-CDGVDHCADG 589
           +V+ N+G D    +++  A K P P+       + R KQ + C    L+  D V+H  D 
Sbjct: 253 HVSQNFGLDTILREMIEQATKQPCPQFKSLTALQKRLKQ-DLCEKRFLLVLDDVEHNKDI 311

Query: 590 SDEDTAAL 613
           S++D +AL
Sbjct: 312 SEDDLSAL 319


>03_02_0329 -
           7498951-7498989,7499219-7499507,7499590-7499760,
           7499839-7500345,7500347-7500726,7500814-7501266
          Length = 612

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 245 CASER*LCNPDSFRSWTTARRHPASCTDVVESGPCIAIP 129
           CAS     NP S  S    R  P SCT +V   P   +P
Sbjct: 131 CASTELAENPTSVDSAVDHRTEPTSCTLIVRVMPTFTVP 169


>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
          Length = 751

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 585 SAQWSTPSHMRSALTQNSRCLHLNSLHPCSGMGSLTAV 472
           S QWS PS    +   +  C  +NS   C G   L AV
Sbjct: 501 SGQWSQPSTSDLSTRGSVECGSMNSCRACRGHSCLAAV 538


>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
          Length = 913

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 143 KDHFLQRQYRKL-DGGVLWSKNERNLDCTVTFQTHSILQRFMLHFDLLQLDCNDHLYVYD 319
           +++   + +RKL D  ++   + RN     T +TH I+  F+L+  L Q      L+ + 
Sbjct: 466 EEYTADKNFRKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLAQRFIGTSLHDHP 525

Query: 320 GAHATTPAKVDLSCRNTKQ 376
                T     LS    KQ
Sbjct: 526 RVGINTSNARHLSVDAAKQ 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,527
Number of Sequences: 37544
Number of extensions: 313581
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)