Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C18
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   1.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   5.0  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   6.6  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   8.7  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   8.7  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   8.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 434 PY*RAQVPSLCKVVSSILCLFLSVCPHQLSIDF 336
           PY  + + +L K+ S IL LFL   PH+ ++++
Sbjct: 335 PYNDSSI-ALSKLTSQILLLFLDHTPHETTVEY 366


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 207 HRYYFFLVLSVYIFSRVSSYIYQISKIVL 293
           H +Y F V S+ ++S  S Y Y I  +++
Sbjct: 332 HPFYIFQVFSIILWSMDSYYYYAICILII 360


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 404 CKVVSSILCLFLSVCPHQLSIDFSIYVC*YLFLVTSMQYNFRNLINIGRN 255
           C V+S  L  F+S+  H  +    ++   ++F++ S+    +NL ++  N
Sbjct: 397 CGVLSRNLS-FISLAAHDTNAQLRVFSSNWIFMLISLSPELKNLASLQTN 445


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 237 PTVPRKSNNDVHLALKIKQLFKNLEAIDLNRKDLTPRTEQKILFNEIRKV 88
           P  P   NN++H    I+ L  +   +    KD     +  + FNEI ++
Sbjct: 2   PNDPSDMNNELHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEI 51


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 134 VKSLRFKSIASKFLNNCLIFNAKCTSLLL 220
           V+  + K +  KFL  C IF   C S L+
Sbjct: 91  VEKKKTKKVFFKFLKTCAIFYQTCISELI 119


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 204 HLALKIKQLFKNLEAIDLNRKDLTPR 127
           HL L +KQ+++     D + KD+ PR
Sbjct: 261 HLELILKQIYEKKLEEDADAKDIAPR 286


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 228 VLSVYIFSRVSSYIYQISKIVLHRCHK-KKVLADVD*EI 341
           V S YIF   ++  Y   K V+HR  K + +L  +D EI
Sbjct: 188 VASKYIFQMANALSYLHKKHVIHRDIKPENILLGIDGEI 226


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -3

Query: 409 LFVKSFRQSCAF--FSPCARIN*ALISQSTSANT---FFL*HLCNTILE 278
           LF K F  + +F  FS C  +      +    N    FFL HLC T +E
Sbjct: 435 LFTKGFWYAISFGVFSNCFSLQLQSFFEKHLGNVVDKFFLEHLCETTIE 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,987
Number of Sequences: 5004
Number of extensions: 40307
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)