Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C18
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29094-4|CAA82344.2| 507|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z72518-2|CAA96700.1| 613|Caenorhabditis elegans Hypothetical pr... 29 2.0
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 28 3.4
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 28 3.4
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 28 3.4
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 28 3.4
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 28 3.4
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 28 3.4
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 28 3.4
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 28 3.4
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 28 3.4
>Z29094-4|CAA82344.2| 507|Caenorhabditis elegans Hypothetical
protein C07A9.6 protein.
Length = 507
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 IFCSVLGV-KSLRFKSIASKFLNNCLIFNAKCTSLLLFLG 229
IFC L V SLR I F N+ ++FN + L FLG
Sbjct: 5 IFCIFLSVVDSLRILQIVPGFTNSHVLFNYRLAETLRFLG 44
>Z72518-2|CAA96700.1| 613|Caenorhabditis elegans Hypothetical
protein ZC374.2 protein.
Length = 613
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 150 NRKDLTPRTEQKILFNEIRKVTYLLIYL 67
NRKDLTP QKI + + T LL +L
Sbjct: 535 NRKDLTPEQWQKIEIEDSKNTTVLLKHL 562
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2513 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2558
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2492 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2537
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2548 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2593
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2502 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2547
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2502 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2547
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2513 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2558
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2502 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2547
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2492 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2537
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 153 LNRKDLTPRTEQKILFNEIRKVTYLLIYLRIKVIKM--HSIILCILLY 16
++ K L R +IL R + YLL+YL I ++ + H +I CILL+
Sbjct: 2548 VSNKGLEDRPIAEIL--ACRNLHYLLVYLFICILGLLVHPMIYCILLF 2593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,365
Number of Sequences: 27780
Number of extensions: 226709
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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