Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C17
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    30   0.31 
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    28   0.93 
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   2.2  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   2.2  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.2  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   2.8  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   2.8  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   5.0  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   8.7  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   8.7  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   8.7  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +3

Query: 165  SSVQNRNISGKALRESLPPRPPKPAPFDYANKYYGWLRSLLDRTTHRFDQNSKFVVVE 338
            S+  +RN +   L + +P   P+  PF+   K Y ++  +LD    +   +S  + V+
Sbjct: 887  SARDDRNQALSYLVDGMPENDPRREPFESRTKCYSYIFEILDSLESQMSNDSSAIKVD 944


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +3

Query: 321 KFVVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHYVRPNGIDLRIFDKQVPEDTRTF 500
           K     GP      +  A L   L   H     + I YVRPN +D  I  ++  + +   
Sbjct: 600 KIAATYGPPLEAIGQVIAHLDVILSFAHASTVAV-IPYVRPNIVDSSIAQEKHGQSSNIL 658

Query: 501 DHINFNQTPN 530
           D ++   TPN
Sbjct: 659 DIVSLEDTPN 668


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 327 VVVEGPVAAGKTEFAASLA 383
           V++ GP+A+GKT  AA++A
Sbjct: 588 VLLSGPIASGKTALAATIA 606


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 270 WLRSLLDRTTHR-FDQNSKFVVVEGPVAAGKTEFAASLADDLGMKH 404
           +L+  L +  HR F + +  + V GPV +GKT     L   LG K+
Sbjct: 69  YLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKY 114


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 309 DQNSKFV-VVEGPVAAGKTEFAASLADDLGMKH 404
           +Q  K+V VV GP  +GKT  A ++++ LG ++
Sbjct: 10  NQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEY 42


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 321 KFVVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHY 434
           +F+ + GP  +GKT  A  +   L + H    ++D  Y
Sbjct: 22  RFIGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFY 59


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 175 RIETSLEKHYGSHCPRVRRNLRRLTMPTST 264
           RIE  + KH G+ CP + R++  L   TS+
Sbjct: 119 RIENYVLKHGGTFCPDLTRDVTHLIAGTSS 148


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 327 VVVEGPVAAGKTEFAASLADDLGM 398
           V++ GP   GKT  A +LA++LG+
Sbjct: 211 VLLHGPPGCGKTMLANALANELGV 234


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 176 LHGTTASYFSSLTST 132
           +HG T SYFSSL  T
Sbjct: 269 IHGVTESYFSSLNDT 283


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 34/135 (25%), Positives = 57/135 (42%)
 Frame = +3

Query: 114  TAVLRISTSQAGKIACCSSVQNRNISGKALRESLPPRPPKPAPFDYANKYYGWLRSLLDR 293
            TA+L +S  + G +    S+++ ++  K        R    A F+Y +KYY  ++ + +R
Sbjct: 639  TALLDMSVKELG-LTNVDSMRS-SVDIKQFFSFSSDRKASGAIFEYKDKYYFVVKGMPER 696

Query: 294  TTHRFDQNSKFVVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHYVRPNGIDLRIFDK 473
                  Q S  V+  G +   + E   S AD         A   +   R  G+  R+FD 
Sbjct: 697  VL----QQSTSVITNGSL--DEVEDMHSHADYFKEMITGYAKRSL---RTLGLCYRVFDS 747

Query: 474  QVPEDTRTFDHINFN 518
              P+D  T D  + N
Sbjct: 748  WPPKDIPTNDEDSSN 762


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 174 QNRNISGKALRESLPPRPPKP 236
           QN+N++  +  E+LPP+P  P
Sbjct: 174 QNQNLAFDSPTEALPPKPTTP 194


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 590 NVLTVPCYIHHNLEVSCQTVIWS 522
           NV+ V C  HHNL V+    ++S
Sbjct: 401 NVIQVVCGTHHNLAVTSDGKVYS 423


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 172 CRIETSLEKHYGSHCPRVRRNLRRLTM 252
           C+   SL K  G HCP  RR +  L++
Sbjct: 52  CQANISLLKIVGLHCPFHRRGIASLSV 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,290
Number of Sequences: 5004
Number of extensions: 46421
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)