Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C17
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 31 0.96
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 30 1.3
05_01_0241 + 1800959-1801502,1802089-1802236,1802458-1802518 26 1.3
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 29 2.9
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 3.9
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 29 3.9
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 29 3.9
05_01_0380 + 2978256-2979284 25 4.7
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 28 5.1
06_03_1497 + 30585074-30586327 28 5.1
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 28 5.1
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626... 28 6.8
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 27 8.9
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 27 8.9
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 27 8.9
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 27 8.9
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 30.7 bits (66), Expect = 0.96
Identities = 23/101 (22%), Positives = 41/101 (40%)
Frame = -3
Query: 416 CFWEMLHA*IISETGSKFSLPSSYWAFNHNKFAILIESVSGAVKKTSQPAIVLVGIVKXX 237
C+W S T S+ S YWA I +V ++K+ + ++ V I
Sbjct: 455 CYWATQFFIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSMKRLLRYSLGSVAIGSLV 514
Query: 236 XXXXXRGQ*LP*CFSRDVSILHGTTASYFSSLTSTNSKHCC 114
+ + C R + ++ S F +TS++S+ CC
Sbjct: 515 VSAVEWVRFILECLRRKLKLVDSARESCFGKMTSSSSQ-CC 554
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/101 (22%), Positives = 40/101 (39%)
Frame = -3
Query: 416 CFWEMLHA*IISETGSKFSLPSSYWAFNHNKFAILIESVSGAVKKTSQPAIVLVGIVKXX 237
C+W S T S+ S YWA I +V ++K+ + ++ V I
Sbjct: 455 CYWATQFFIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSLKRLLRYSLGSVAIGSLV 514
Query: 236 XXXXXRGQ*LP*CFSRDVSILHGTTASYFSSLTSTNSKHCC 114
+ + C R + + S F +TS++S+ CC
Sbjct: 515 VSAVEWVRFILECLRRKLKLFDSARESCFGKMTSSSSQ-CC 554
>05_01_0241 + 1800959-1801502,1802089-1802236,1802458-1802518
Length = 250
Score = 25.8 bits (54), Expect(2) = 1.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 216 PPRPPKPAPFDYANK 260
PPRPP P P D +++
Sbjct: 113 PPRPPTPTPLDVSDQ 127
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 195 KALRESLPPRPPKP 236
K R PPRPP+P
Sbjct: 103 KKKRSKKPPRPPRP 116
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 309 DQNSKFVVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHYVRPNGIDL 458
D N +++ GP GKT SLA +L + EA ++++ G+D+
Sbjct: 47 DGNMPNLILSGPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDV 96
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 132 STSQAGKIACCSSVQN----RNISGKALRESLPPRPPKPAPFDYANKYYGWLRSLLDRTT 299
++++ G+ +C S V +++S LPPRPP PA + ++ W + +++R T
Sbjct: 1359 ASAERGRRSCSSEVSQLTVVKDLSVDKQELLLPPRPPPPAMAEAPHR--EWKKKVIERLT 1416
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 175 RIETSLEKHYGSHCPRVRRNLRRLTMP 255
R+ SL +HY HCP R L L P
Sbjct: 98 RLNLSLMQHYERHCPPAHRRLNCLIPP 124
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 141 QAGKIACCSSVQNRNISGKALRESLPPRPPKPA 239
QAG C ++ ++ A RE PP PP+P+
Sbjct: 3 QAGYFLCSEITASKLLTVTATRELKPPPPPRPS 35
>05_01_0380 + 2978256-2979284
Length = 342
Score = 25.0 bits (52), Expect(2) = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 132 STSQAGKIACCSSVQNRNISGKALRESLPPRPPKPAP 242
ST+ G+ AC Q R G+ R +PP PP P P
Sbjct: 3 STAPVGE-AC----QRRLALGRTERVRMPPPPPPPPP 34
Score = 21.8 bits (44), Expect(2) = 4.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 216 PPRPPKPAPF 245
PP PP P PF
Sbjct: 35 PPPPPPPRPF 44
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 426 IHYVRPNGIDLRIFDKQVP--EDTRTFDHINFNQTPNHRLAA 545
+HY P+G IFD VP +D FD+ N + N +AA
Sbjct: 243 VHYSPPDGFGFEIFDDFVPVQDDMLLFDY-NLKERVNDFVAA 283
>06_03_1497 + 30585074-30586327
Length = 417
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 318 SKFVVVEGPVAAGKTEFAASLADDL 392
+K +V+ GP AGKT A LA L
Sbjct: 25 NKVIVISGPTGAGKTRLALDLAKRL 49
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +3
Query: 216 PPRPPKPAPFDYANKYYGWLRSLLDRTTHRFDQNSKFV-VVEGPVAAGKTEFAASLADD 389
PP PP P P + + W R L TT + + F V VA G + S D
Sbjct: 48 PPPPPPPPPLEVVSPSPRWRRPGLRVTTEYDSEEAMFAHKVSCKVAGGLAKLRLSFQSD 106
>06_03_1328 +
29361248-29361502,29361903-29362453,29362585-29362671,
29362910-29362966,29363069-29363307,29364190-29364308,
29364397-29364483,29365511-29365567
Length = 483
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 440 TDIVNVHVCFWEMLHA*IISETGSKFSLPSSYWAFNHNKFAILIE 306
T ++++ +C W M+H + G+ S+ SYW FN AI ++
Sbjct: 190 TLVIHILLC-WVMVHCFDLGNRGAALSISLSYW-FNVILLAIYVK 232
>07_01_0890 -
7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 511 LIWSNVLVSSGTCLSNILKSMPLGR 437
++W+ VL GTCL +L SM L R
Sbjct: 707 VLWAAVLADVGTCLLVVLNSMTLLR 731
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 511 LIWSNVLVSSGTCLSNILKSMPLGR 437
LIW+ VL GTCL I+ SM L R
Sbjct: 673 LIWAAVLADVGTCLLVIMYSMLLLR 697
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 566 IHHNLEVSCQTVIWSLIKVDMVKCSSIL--WHL 474
I H + +C T +WS + V M C + L WHL
Sbjct: 276 IEHLIPDNCATKVWSYVNVQM-NCDAQLEGWHL 307
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +3
Query: 192 GKALRESLPPRPPKPAPFDYANKYYGWLRSLLDRTTHRFDQNSKFVVVEGPVAAGKTEFA 371
GK+ RE P PP P P A + R + D+ SK + A E A
Sbjct: 37 GKSFREKSPAHPPPPPPPSAAVQRAVTPRRAYTASDEGDDEQSKRAIAVAAATAAVAEAA 96
Query: 372 ASLA 383
+ A
Sbjct: 97 VAAA 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,291
Number of Sequences: 37544
Number of extensions: 310091
Number of successful extensions: 1456
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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