Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C17
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...   104   6e-23
U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical pr...    78   6e-15
Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    28   6.1  

>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
           protein K04G7.4a protein.
          Length = 436

 Score =  104 bits (249), Expect = 6e-23
 Identities = 60/157 (38%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
 Frame = +3

Query: 147 GKIACCSSVQNRNISGKALRESLPPRPPK-PAPFDYANKYYGWLRSLLDRTTHRFDQNSK 323
           G +AC  S    N     + +SL   P + P P+DY +  + ++  L D T   F QNSK
Sbjct: 14  GLLACSRSGALSNQVRGVVHKSLLRLPSEHPEPWDYKHNGFNYIDGLKDDTRSHFHQNSK 73

Query: 324 FVVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHYVRPNGIDLRIFDKQVPEDTRTFD 503
            +VVEG + +GKT  A  LAD LG  HFPE  MD   V   G DLR +  + P   R  D
Sbjct: 74  LIVVEGNIGSGKTTLAKQLADQLGFVHFPEFRMDDILVDRYGNDLRNYYNKFPARYRLPD 133

Query: 504 HINFNQTPNHRLAANFQIMMYIARYSQYIDALTHLLN 614
              F + P+  L+A  Q  ++  R+ QY++AL H+LN
Sbjct: 134 ISMFYKNPSGELSAAMQDRIFNCRFDQYLNALAHILN 170


>U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical
           protein K04G7.4b protein.
          Length = 188

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
 Frame = +3

Query: 147 GKIACCSSVQNRNISGKALRESLPPRPPK-PAPFDYANKYYGWLRSLLDRTTHRFDQNSK 323
           G +AC  S    N     + +SL   P + P P+DY +  + ++  L D T   F QNSK
Sbjct: 14  GLLACSRSGALSNQVRGVVHKSLLRLPSEHPEPWDYKHNGFNYIDGLKDDTRSHFHQNSK 73

Query: 324 FVVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHYVRPNGIDLRIFDKQVPEDTRTF 500
            +VVEG + +GKT  A  LAD LG  HFPE  MD   V   G DLR +  ++    +TF
Sbjct: 74  LIVVEGNIGSGKTTLAKQLADQLGFVHFPEFRMDDILVDRYGNDLRNYYNKLVTVFQTF 132


>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 443 RTDIVNVHVCFWEMLHA*IISETGSKFSLPSSYWAFNHNKFAILIESVSGAVKKTSQP 270
           R  IVNV   F  +++   + E   + SL SS   FN  KF  L   V+ +  K  +P
Sbjct: 126 RKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELSAKVAKSAPKAEKP 183


>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 443 RTDIVNVHVCFWEMLHA*IISETGSKFSLPSSYWAFNHNKFAILIESVSGAVKKTSQP 270
           R  IVNV   F  +++   + E   + SL SS   FN  KF  L   V+ +  K  +P
Sbjct: 134 RKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELSAKVAKSAPKAEKP 191


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 443 RTDIVNVHVCFWEMLHA*IISETGSKFSLPSSYWAFNHNKFAILIESVSGAVKKTSQP 270
           R  IVNV   F  +++   + E   + SL SS   FN  KF  L   V+ +  K  +P
Sbjct: 159 RKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELSAKVAKSAPKAEKP 216


>Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical
           protein F54B3.3 protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +3

Query: 273 LRSLLDRTTHRFDQNSKF--VVVEGPVAAGKTEFAASLADDLGMKHFPEANMDIHYVRPN 446
           LR +   T++    N  F  V+  GP   GKT FA SLA   G+ +      DI  +  +
Sbjct: 325 LRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSGLDYAVLTGGDIAPLGRD 384

Query: 447 GIDL--RIFD 470
           G+    ++FD
Sbjct: 385 GVSAIHKVFD 394


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 222 RPPKPAPFDYANKYYGWLRSLLDRTTHRFDQNSKF 326
           R  K   +D+AN +  WL+ L  R T    + S+F
Sbjct: 516 RQTKEGSYDHANSFQVWLKKLHSRVTKERHRLSRF 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,373,600
Number of Sequences: 27780
Number of extensions: 266082
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)