Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C16
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   1.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.0  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   4.5  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   4.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.9  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 287 AAPQHHSELERVHQVLHQEQPAQLVQ 210
           A PQH  E   +++  H  QP QLVQ
Sbjct: 301 ADPQHPEECTTLYEDFHPFQPLQLVQ 326


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 284 APQHHSELERVHQVLHQEQPAQ 219
           APQ H +L+R+  +L   QP Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = -3

Query: 439 LAEMSLILERASCRFASTC--SLFISYAF-----GNVKSA 341
           L ++S+I ERASC FAS     + + YA      GN+ SA
Sbjct: 333 LNDVSIIYERASCIFASISRPGIRVQYALFEESQGNIASA 372


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 46  SPAPSRSGSTRTCSRLYKRPTMVTPSSGWWRR 141
           SP PSR  S R+  +  ++   VTP + W R+
Sbjct: 100 SPPPSRERSVRSIEQELEQLRDVTPINQWKRK 131


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 106 LVFCTAWSTFL*IRNATAPESTSSEAYAS 20
           L+FC+ W  +  I +A    S++S +Y S
Sbjct: 626 LLFCSGWIAYRAISDAIHNASSTSSSYTS 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,670
Number of Sequences: 5004
Number of extensions: 19991
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)