Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C16
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 45 4e-05
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 42 3e-04
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 40 8e-04
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 40 0.001
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 39 0.002
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 38 0.004
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 38 0.004
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 37 0.007
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 34 0.052
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 34 0.052
11_04_0152 + 14153539-14154060 31 0.64
12_02_0217 + 15814303-15814905 30 1.1
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 29 1.5
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 29 1.5
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 4.5
06_03_1078 + 27418886-27419215 28 4.5
02_04_0128 - 20001141-20002469 28 4.5
01_06_0549 + 30149016-30149761,30149922-30150088,30150236-301503... 27 6.0
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 27 7.9
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 27 7.9
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 27 7.9
02_04_0629 + 24597370-24597789 27 7.9
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +3
Query: 141 DISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVEDLVDSLKFGVMLWCGTYLGACFNGIT 320
++ +P + A +V R + DL L V LW + LG+C N +T
Sbjct: 133 EVKIPEDLAVNVARSLRFEINRGFATLREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLT 192
Query: 321 LIILGWVALFTLPKAYEMNKEQVDA 395
L + ++ L+T+P YE ++Q+DA
Sbjct: 193 LFYIVFMVLYTVPVLYEKYEDQIDA 217
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 141 DISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVEDLVDSLKFGVMLWCGTYLGACFNGIT 320
++ +P + ++ R++ L D+ L LW + LG+C N +T
Sbjct: 161 EVIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLT 220
Query: 321 LIILGWVALFTLPKAYEMNKEQVDA 395
L+ + +V L T+P YE ++Q+D+
Sbjct: 221 LVYIVFVVLHTVPILYEKYEDQIDS 245
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 270 VMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQ----LARSKINDISA 437
V LW +G N +T+I +G+V+ TLP YE ++QVD L L R + +
Sbjct: 206 VGLWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQ 265
Query: 438 NVRAAVPLG 464
V + +P G
Sbjct: 266 GVLSKIPKG 274
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 276 LWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLA----RSKINDISANV 443
L+ + + +CF+ +TL+ L + TLP YE + +VD + A RS + DI + V
Sbjct: 141 LFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRSHVGDIDSGV 200
Query: 444 RAAVPLGR 467
+P GR
Sbjct: 201 FKKIPRGR 208
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 270 VMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVD 392
++LW + +G + ITL G +AL T+P Y N+EQVD
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVD 196
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 144 ISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVEDLVDSLKFGVMLWCGTYLGACFNGITL 323
+ +P + A +V R + L DL L V LW + +G+C + +TL
Sbjct: 148 VQIPEDVAVNVSRALRSDINRALHLFREIALGHDLKKFLGVIVALWVLSEVGSCCDFLTL 207
Query: 324 IILGWVALFTLPKAYEMNKEQVD 392
I + + L T+P Y+ +++VD
Sbjct: 208 IYVAVLMLHTVPILYDKYQDKVD 230
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 141 DISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVEDLVDSLKFGVMLWCGTYLGACFNGIT 320
++ +P + ++ R + DL L LW + LG+ N +T
Sbjct: 135 EVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDLKKFLIVIAGLWILSVLGSSCNFLT 194
Query: 321 LIILGWVALFTLPKAYEMNKEQVDA 395
L + +VAL+T+P YE +++VDA
Sbjct: 195 LFYIVFVALYTVPVLYEKYEDKVDA 219
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDA----NLQLA 410
DL + L + +G+ N +T+I +G+V TLP YE N+E+VD L L
Sbjct: 161 DLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLL 220
Query: 411 RSKINDISANVRAAVPLG 464
+++ + V VP G
Sbjct: 221 QNQYQKLDKGVLGKVPKG 238
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +3
Query: 258 LKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKIN 425
+K ++LW +Y+G FN +TLI + +P YE ++QVD + +A S ++
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLI-------YIVPPLYEKYQDQVDEKIGMAHSVLS 172
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 34.3 bits (75), Expect = 0.052
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = +3
Query: 141 DISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVEDLVDSLKFGVMLWCGTYLGACFNGIT 320
++ + + A +V R + L DL+ L V LW + +G+ + +T
Sbjct: 111 EVKISEDLAVNVALALRTDINQALHLLREISLGHDLMKFLGVIVALWILSEIGSLCDFLT 170
Query: 321 LIILGWVALFTLPKAYEMNKEQVD-----ANLQLARSKINDISANVRAAVPLG 464
L + + L T+P Y +++VD A+++L+R + + + A V + +P G
Sbjct: 171 LFYVAVLMLHTVPILYHKYQDKVDHFAGKAHVELSR-QYSVLDAKVLSKIPRG 222
>11_04_0152 + 14153539-14154060
Length = 173
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 338 GGALHVAEGVRDEQGASGREPAARALQDQRH 430
GG + A+G R E+G++G PA R + RH
Sbjct: 14 GGGVGAADGARVEEGSTGEIPARRMERPARH 44
>12_02_0217 + 15814303-15814905
Length = 200
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 320 AHHPRLGGALHVAEGVRDEQGASGREPAARALQDQRH 430
AH GG A+ R+E+G +G PA R + RH
Sbjct: 39 AHRCDAGGGGGAADSAREEEGPTGEIPARRMERPARH 75
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 276 LWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVD 392
LW +G + TL+ +G++ TLP YE + +VD
Sbjct: 147 LWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVD 185
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 293 PRRLLQRHHAHHPRLGGALH 352
PR+LL HH HHP AL+
Sbjct: 188 PRQLLPHHHHHHPGSSAALY 207
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 CSRTPRCWCSPAPSRSG-STRTCSRLYKRPTMVTPSSGWWRRT 144
CS T R WC P SR T TC + V G W T
Sbjct: 452 CSNTFRVWCHPYCSRQDPGTSTCGFYVMKFMRVFMEDGNWNIT 494
>06_03_1078 + 27418886-27419215
Length = 109
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 10 SCRCSRTPR-CWCSPAPSRSGSTRTCSRLYKRPTMVTPSSGWWRR 141
S R +R P + P P G T +++P MV G WRR
Sbjct: 28 SSRSNRAPSGAFRPPDPRHPGRIWTGGGWWRQPVMVAAGGGGWRR 72
>02_04_0128 - 20001141-20002469
Length = 442
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 338 GGALHVAEGVRDEQGASGREPAAR-ALQDQRHLSQCARGRA 457
G + E + DE+G GR AA A+ HL CA GR+
Sbjct: 303 GAVAALVELLLDEEGGGGRRRAAELAVVAIDHLCGCAEGRS 343
>01_06_0549 +
30149016-30149761,30149922-30150088,30150236-30150320,
30150499-30150658
Length = 385
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 19 CSRTPRCWCSPAPSRSGSTRTCSRLYKRPTMVTPSSGWW 135
C TP SPAPSRS +T T PT + G+W
Sbjct: 128 CFSTPS---SPAPSRSSATTTTR---PAPTTTATADGYW 160
>07_03_0631 + 20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 296 RRLLQRHHAHHPRLGGALHVAEGVRDEQGASGREPAARALQDQRHLSQCARGR 454
RR HH+ R G AE + +G+S P R +++RH S RGR
Sbjct: 921 RRASGEHHSPGQRDGPQKQPAE---ERRGSSPASPRHRLPRERRHGSGARRGR 970
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 463 PSGTAARTLAEMSLILERASCRFASTCSLFISYAFGNVKSATQPRMMSVMPLKQAPRYVP 284
PS R A ++ ++ERAS ++ ++++FG A + + PL R+V
Sbjct: 546 PSAVGERYFARLTRLIERASRLNGGRPAVVVAHSFG---CALTYQFLRARPLAWRQRFVK 602
Query: 283 H 281
H
Sbjct: 603 H 603
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 264 FGVMLWCGTYLGACFNGITLIILGW 338
FG+ WC Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>02_04_0629 + 24597370-24597789
Length = 139
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +2
Query: 332 RLGGALHVAEGVRDEQGASGREPAARALQDQRHLSQCAR----GRATRQE 469
RLG A+ +A G D + +GREP A D C R GR R++
Sbjct: 14 RLGAAV-LAAGSVDRRARAGREPGAGRRDDGSRTVACGRPPGDGRKARRD 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,121,518
Number of Sequences: 37544
Number of extensions: 166101
Number of successful extensions: 923
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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