Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C16
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 94 4e-20
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 94 4e-20
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 94 4e-20
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 94 4e-20
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 94 4e-20
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 92 2e-19
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 29 1.8
AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (... 29 1.8
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 27 7.1
AF024502-3|AAB70373.1| 836|Caenorhabditis elegans Hypothetical ... 27 7.1
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 27 9.4
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 94.3 bits (224), Expect = 4e-20
Identities = 41/137 (29%), Positives = 77/137 (56%)
Frame = +3
Query: 63 FRIYKNVLQAVQKTNDGHPFKWLVEKDISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVE 242
FR++K V ++KT+ HPF ++ +D+++P E+ + ++L VE
Sbjct: 58 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 117
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKI 422
++S+KFG++LW TY+ + F+G TL ILG + +F++PK YE N+E +D +L +
Sbjct: 118 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 177
Query: 423 NDISANVRAAVPLGRKS 473
++ + +P R +
Sbjct: 178 KNVQNIIDEKLPFLRSA 194
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 94.3 bits (224), Expect = 4e-20
Identities = 41/137 (29%), Positives = 77/137 (56%)
Frame = +3
Query: 63 FRIYKNVLQAVQKTNDGHPFKWLVEKDISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVE 242
FR++K V ++KT+ HPF ++ +D+++P E+ + ++L VE
Sbjct: 424 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 483
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKI 422
++S+KFG++LW TY+ + F+G TL ILG + +F++PK YE N+E +D +L +
Sbjct: 484 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 543
Query: 423 NDISANVRAAVPLGRKS 473
++ + +P R +
Sbjct: 544 KNVQNIIDEKLPFLRSA 560
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 94.3 bits (224), Expect = 4e-20
Identities = 41/137 (29%), Positives = 77/137 (56%)
Frame = +3
Query: 63 FRIYKNVLQAVQKTNDGHPFKWLVEKDISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVE 242
FR++K V ++KT+ HPF ++ +D+++P E+ + ++L VE
Sbjct: 2338 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2397
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKI 422
++S+KFG++LW TY+ + F+G TL ILG + +F++PK YE N+E +D +L +
Sbjct: 2398 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2457
Query: 423 NDISANVRAAVPLGRKS 473
++ + +P R +
Sbjct: 2458 KNVQNIIDEKLPFLRSA 2474
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 94.3 bits (224), Expect = 4e-20
Identities = 41/137 (29%), Positives = 77/137 (56%)
Frame = +3
Query: 63 FRIYKNVLQAVQKTNDGHPFKWLVEKDISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVE 242
FR++K V ++KT+ HPF ++ +D+++P E+ + ++L VE
Sbjct: 76 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 135
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKI 422
++S+KFG++LW TY+ + F+G TL ILG + +F++PK YE N+E +D +L +
Sbjct: 136 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 195
Query: 423 NDISANVRAAVPLGRKS 473
++ + +P R +
Sbjct: 196 KNVQNIIDEKLPFLRSA 212
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 94.3 bits (224), Expect = 4e-20
Identities = 41/137 (29%), Positives = 77/137 (56%)
Frame = +3
Query: 63 FRIYKNVLQAVQKTNDGHPFKWLVEKDISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVE 242
FR++K V ++KT+ HPF ++ +D+++P E+ + ++L VE
Sbjct: 2461 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2520
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKI 422
++S+KFG++LW TY+ + F+G TL ILG + +F++PK YE N+E +D +L +
Sbjct: 2521 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2580
Query: 423 NDISANVRAAVPLGRKS 473
++ + +P R +
Sbjct: 2581 KNVQNIIDEKLPFLRSA 2597
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 91.9 bits (218), Expect = 2e-19
Identities = 40/137 (29%), Positives = 76/137 (55%)
Frame = +3
Query: 63 FRIYKNVLQAVQKTNDGHPFKWLVEKDISVPAERAQSVXXXXXXXXXXXXXXXRRLFLVE 242
F ++K V ++KT+ HPF ++ +D+++P E+ + ++L VE
Sbjct: 2342 FSVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2401
Query: 243 DLVDSLKFGVMLWCGTYLGACFNGITLIILGWVALFTLPKAYEMNKEQVDANLQLARSKI 422
++S+KFG++LW TY+ + F+G TL ILG + +F++PK YE N+E +D +L +
Sbjct: 2402 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2461
Query: 423 NDISANVRAAVPLGRKS 473
++ + +P R +
Sbjct: 2462 KNVQNIIDEKLPFLRSA 2478
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 305 LQRHHAHHPRLGGALHVAEGVRDEQGASGREPAARALQDQRHLSQCARGRATRQEV*D 478
+Q+H HP +GG + + +QGA G + A +Q Q+ + Q A +A ++ D
Sbjct: 289 MQQHQQQHPGMGGP-EMGGHMHAQQGAPGSQ--AAPVQQQQQIQQQAPPQAPAEKTED 343
>AC024790-2|AAF60638.1| 220|Caenorhabditis elegans Ground-like (grd
related) protein 5 protein.
Length = 220
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 10 SCRCSRTPRCWCSPAPSRSGSTRTCSRLYKRPTMVTPSSGW 132
SC CS P C P PS G +R Y PT +G+
Sbjct: 24 SCGCSAPPACPPPPPPSPCGG-GGYARAYSAPTFTAGGAGY 63
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 363 AYEMNKEQVDANLQLARSKINDISANVRAAVPLGRKS 473
A EM+KE +DA ++L + D+ + A+ G+K+
Sbjct: 255 AKEMSKEFIDAEMKLFADQCKDVDIIITTALIPGKKA 291
>AF024502-3|AAB70373.1| 836|Caenorhabditis elegans Hypothetical
protein M151.3 protein.
Length = 836
Score = 27.1 bits (57), Expect = 7.1
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Frame = +3
Query: 237 VEDLVDSLKFGVMLWCGTYLGACFNGITLI---ILGWVALF-TLPK-----AYEMNKEQV 389
+EDL + LKF + G CF+G T + ILG+ F + P EM++
Sbjct: 238 IEDLEEKLKFAEQHFHGELQETCFSGETCLETGILGYRGKFPSAPSEAEKMLKEMSRTTN 297
Query: 390 DA-NLQLARSKINDISANV 443
DA L L S++ + SAN+
Sbjct: 298 DAKKLILMNSRVVEGSANL 316
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 94 YKRPTMVTPSSGWWRRTLAC 153
Y+RP +V S +W RTL C
Sbjct: 95 YQRPNIVLHGSDFWLRTLDC 114
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 94 YKRPTMVTPSSGWWRRTLAC 153
Y+RP +V S +W RTL C
Sbjct: 95 YQRPNIVLHGSDFWLRTLDC 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,879,133
Number of Sequences: 27780
Number of extensions: 122572
Number of successful extensions: 657
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -