Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C16
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.24 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   0.74 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.74 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   5.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   6.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 308 EAGAEVRAAPQHHSELERVHQVLHQEQPAQLVQQR 204
           E   +++A  QH  + ++   V++ +QP Q  QQ+
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQ 447


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 75  KNVLQAVQKTNDGHPFKWL 131
           + +L+A +++N   PF+WL
Sbjct: 210 RGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 75  KNVLQAVQKTNDGHPFKWL 131
           + +L+A +++N   PF+WL
Sbjct: 300 RGILEAARRSNLSQPFQWL 318


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -2

Query: 308 EAGAEVRAAPQHHSELERVHQVLHQEQPAQLVQQR 204
           + G     A Q H +    H +  Q+Q +Q   Q+
Sbjct: 182 QQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQ 216


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 67  GSTRTCSRLYKRPTMVTPSS 126
           G+  TC  +++ P+M TP++
Sbjct: 50  GNIITCIVIWRNPSMQTPTN 69


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 291 YLGACFNGITLIILGWVALFTLPKAYEMNKEQ 386
           YLG CF  +   +L +  +  + K  +M K +
Sbjct: 286 YLGTCFVMVFASLLEYATVGYMAKRIQMRKNR 317


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 291 YLGACFNGITLIILGWVALFTLPKAYEMNKEQ 386
           YLG CF  +   +L +  +  + K  +M K +
Sbjct: 286 YLGTCFVMVFASLLEYATVGYMAKRIQMRKNR 317


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 291 YLGACFNGITLIILGWVALFTLPKAYEMNKEQ 386
           YLG CF  +   +L +  +  + K  +M K +
Sbjct: 225 YLGTCFVMVFASLLEYATVGYMAKRIQMRKNR 256


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 258 LKFGVMLWCGTYLGACFNGI 317
           LK G  + CGT+LG+   GI
Sbjct: 61  LKDGFPIKCGTFLGSGGFGI 80


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 334 PRMMSVMPLKQAPRYVP 284
           PR   + PL   PR++P
Sbjct: 143 PRFRHIGPLTPFPRFIP 159


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 334 PRMMSVMPLKQAPRYVP 284
           PR   + PL   PR++P
Sbjct: 384 PRFRHIGPLTPFPRFIP 400


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 390 DANLQLARSKINDISANVRAAVP 458
           D N ++  + +ND+  N R   P
Sbjct: 394 DVNFRILIANVNDLIKNTRCISP 416


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 329 DDERDAVEAGAEVRAAPQHHSELERVHQVLHQEQPAQLVQQRVEMS 192
           + +R  +E   E     + HS+     Q   Q+Q  Q  QQ+ + S
Sbjct: 63  EQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQS 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,073
Number of Sequences: 438
Number of extensions: 1854
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)