Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C15
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.13 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.29 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    28   0.67 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   1.6  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    27   2.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   6.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.3  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   8.3  

>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +3

Query: 99  TSSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQGYQ 278
           T   +   N++  P++    RQ++      S Y     PP      I  +  PL H  Y+
Sbjct: 466 THYSYESNNSSFSPYYHKRHRQISPYYPTSSVYGVYESPPHMSDSRISRQHMPLTHTTYE 525

Query: 279 TTRSYHHDF 305
            +  Y++D+
Sbjct: 526 PSAPYYNDY 534


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 141 HHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQG 272
           HH+          H H P E  P PP    H +++ E P HH+G
Sbjct: 317 HHEPGEHMPPPPMH-HEPGEHMP-PPPFKHHELEEHEGPEHHRG 358


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +3

Query: 105 SKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQGYQTT 284
           S++ V +    P H   S +L      HSPY    +   +   A     S  +HQ Y TT
Sbjct: 61  SENFVSHIPLTPSHSGQSEKLMSTRTSHSPYISPTMSYTNHSPANLTRNSSFNHQHYSTT 120


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 102 SSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPG 221
           ++K H+G   K+PH   LS+   ++    +P E E L  G
Sbjct: 115 NAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEG 154


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 353 LLAARGLLRHVDVRIPEVVVVASSRLITLMVQW 255
           LL  R LL H+D R P   +     +I  ++QW
Sbjct: 410 LLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQW 442


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = +3

Query: 93  KNTSSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQG 272
           K+    HH      +PH+ T       ++  H     +  P   P +  K +  P  H+ 
Sbjct: 197 KHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFPRPVPHNGTKPDHKPWKHEE 256

Query: 273 YQTTRSYHHD 302
           +    S HHD
Sbjct: 257 H---CSCHHD 263


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 134  TASSRHPVATVGSAESSPQSL*MRTITARLTSS 232
            T SS   VAT  + +SS  S+ + ++T   TSS
Sbjct: 1023 TDSSTSSVATASATDSSTSSIAVASVTGSSTSS 1055


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/59 (25%), Positives = 20/59 (33%)
 Frame = +3

Query: 114 HVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQGYQTTRS 290
           H G T     H       A   H H  Y+ E    G     +KD+   +  + Y  T S
Sbjct: 175 HHGPTLGAKQHSHSHEDGAHGVHEHPVYDIEECADGVEHECVKDDLEEVKLEPYTNTDS 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,377
Number of Sequences: 5004
Number of extensions: 37339
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)