Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C15
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 32 0.29
03_04_0174 - 18044516-18046327 30 1.2
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 29 2.1
08_02_0707 - 20212190-20214592 28 3.6
11_01_0772 - 6455042-6458107 28 4.7
05_04_0132 + 18303925-18307164 28 4.7
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 28 4.7
11_06_0743 + 26847652-26849424 27 6.3
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 27 6.3
02_01_0035 - 220036-221419,222050-222801 27 6.3
12_02_0154 + 14494319-14495857 27 8.3
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 27 8.3
07_01_0862 - 7172083-7172931 27 8.3
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 27 8.3
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 PYECEPLPPGSPRHAIKDEESPLHHQGYQTTRSYHH 299
P +PLPP P +++ P HQ Q + YHH
Sbjct: 990 PTPQQPLPPPPPPPSLQQLHHPYQHQQQQQQQLYHH 1025
>03_04_0174 - 18044516-18046327
Length = 603
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +3
Query: 147 DTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDE----ESPLHHQGYQTTRSYHH 299
DTL R ++ +H H + P PP P + SP H + T YHH
Sbjct: 2 DTLFRLVSLHHHHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHT-YYHH 55
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 66 PNDTARMDSKNTSSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYE 200
PN R HH T PHH ++ QQ+H H+ ++
Sbjct: 19 PNYYNRGPPLQQQHNHHQQQQTSAPHHQQYVQRQPQQHHHHNHHQ 63
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +3
Query: 90 SKNTSSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQ 269
+K+ HH ++ + HH++L+ ++NH H C G H + HHQ
Sbjct: 547 NKSHHHDHHHDSSNEESHHNSLTENSCKENHSH----CH----GHDHHHHHHHDHSEHHQ 598
Query: 270 GYQTTRSYHHDFRN 311
Q+ H D N
Sbjct: 599 --QSGDHAHQDISN 610
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 85 WTARTLLLNITWETRRNCLITTP 153
++ LL + WE RR C +TTP
Sbjct: 230 FSVEALLRKLLWEIRRRCELTTP 252
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 273 NLDGAVGFLHLL*HDEVSLAVMVRIHKDCGDDSAEPTVATGCRDEA 136
+LDG H + +E++ AV+ +D ++ + GC DEA
Sbjct: 331 SLDGEFSDEHGIRDEEITRAVVSEFQEDQEEEGTSGRLGDGCEDEA 376
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 225 PRHAIKDEESPLHHQGYQTTR-SYHHDFRNPH 317
PRHA SP HH + R ++HH R+PH
Sbjct: 26 PRHAPFLPLSPYHHHLHLHLRVAHHHHGRHPH 57
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 110 TSRGKHDETASSRHPVATVGSAESSPQS--L*MRTITARLTSSCYKR*RKPTAPSRLSND 283
++RG+ RHPV + S S P R + R + C +R R P PS ++
Sbjct: 267 SARGRRGRRNKPRHPVPLLPSTTSPPPEPPELRRARSGRCSPRCRRRARAP--PSSSTSP 324
Query: 284 *KLPPRLPESSRLHVA 331
P LP ++R A
Sbjct: 325 PWPEPALPAAARTAAA 340
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 207 PLPPGSPRHAIKDEESPLHHQ 269
P PP SPRH D P H +
Sbjct: 255 PPPPTSPRHGASDPAQPRHQE 275
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 141 HHDTLSRQLAQQNHLHSPYECEPLPPG--SPRHAIKDEESPLHHQG 272
HH L QL + H H ++ +P PP +P+H P HH G
Sbjct: 104 HHPHL--QLFHEQHHHQKHQQQPPPPARWAPQH--HHHHHPHHHLG 145
>12_02_0154 + 14494319-14495857
Length = 512
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +3
Query: 93 KNTSSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKD---EESPLH 263
K T +H + H T+ L +H + CEP P P+H I D + PLH
Sbjct: 214 KTTLVQHACDDARVRSHFTTIL--LFNFSHTYKMEMCEPKPVLRPKHVIGDVGNSDDPLH 271
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 129 SCFPRDV*KKCSCCPFWRYHW 67
SC +D+ +K C FW HW
Sbjct: 626 SCLHKDLEEKKPCVLFWNNHW 646
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 192 PYECEPLPPGSPRHAIKDEESPLHH 266
P + +PLPP SP A K+E L H
Sbjct: 208 PPKKKPLPPPSPTAAAKEEPIELEH 232
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 189 SPYECEPLPPGSPRHAIKDEESPLHHQGYQTTRSYHH 299
SP + P SPRH P HH Q +S+HH
Sbjct: 142 SPIPISSIAPSSPRH-------PHHHSQPQQPQSHHH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,081
Number of Sequences: 37544
Number of extensions: 292195
Number of successful extensions: 783
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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