Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C15
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 30 1.1
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 29 2.4
Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein. 28 3.2
Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical pr... 27 5.7
U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily ass... 27 5.7
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 27 7.5
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 27 7.5
U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical pr... 27 7.5
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 27 9.9
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 27 9.9
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 27 9.9
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 159 RQLAQQNHLHSPY-ECEPLPPGSPRHAIKDEESPLHHQGYQTTRSYHHDF-RNPHVYMSQ 332
+Q QQ H P + P P H + SP H+Q Q + Y ++P Q
Sbjct: 467 QQQQQQYHQMPPQPQHSPYPQQQQMHHQMVQHSPHHYQQQQQQQQYQQQHQQSPQFPSYQ 526
Query: 333 QSPGSQE 353
QSP Q+
Sbjct: 527 QSPQQQQ 533
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 28.7 bits (61), Expect = 2.4
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +3
Query: 129 TKLPHHDTLSRQLAQQNHLHSPYEC 203
TK+PH+DT+ R + +++++ + C
Sbjct: 52 TKIPHNDTIRRHMQKEHNIQRVFTC 76
>Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical
protein F10B5.6 protein.
Length = 655
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = -2
Query: 185 EMILLSQLSRQGVVMRQFRRVSHVMFRRSVLAVH 84
+++ +++ + VV+RQ+RR+SH++ R + +H
Sbjct: 93 DIVTIAEYVKILVVLRQWRRISHIIARGNYHQIH 126
>AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein.
Length = 655
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = -2
Query: 185 EMILLSQLSRQGVVMRQFRRVSHVMFRRSVLAVH 84
+++ +++ + VV+RQ+RR+SH++ R + +H
Sbjct: 93 DIVTIAEYVKILVVLRQWRRISHIIARGNYHQIH 126
>Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical
protein F14D7.2 protein.
Length = 457
Score = 27.5 bits (58), Expect = 5.7
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +3
Query: 57 DDIPNDTARMDSKNTSSKHHVGNT---TKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSP 227
D P+DT R D +TSS+ G T P + A Q + S + E P P
Sbjct: 169 DRTPSDTERTDEASTSSRLPTGTTGSGITFPANKNNDSDKASQASVDSDLKRETQIPNYP 228
Query: 228 RHAIKDEESPLHHQGYQTTRSYHHDFRNPHVYMSQQSP 341
R D + P G T+ S + H S ++P
Sbjct: 229 RRR-PDSDPP---GGRVTSPSDVQSGASSHTRESDETP 262
>Z66514-4|CAH10807.1| 626|Caenorhabditis elegans Hypothetical
protein K01A11.5 protein.
Length = 626
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/80 (27%), Positives = 28/80 (35%)
Frame = +3
Query: 57 DDIPNDTARMDSKNTSSKHHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHA 236
D I N T S T S + NT K D + L E L S +
Sbjct: 90 DSIANSTQETSSDTTDS---MANTEKFFDFDPAVFPEEMDHDLQETSEFNLLCHNSYQSP 146
Query: 237 IKDEESPLHHQGYQTTRSYH 296
+DEE+P H + T H
Sbjct: 147 FEDEETPYHPDWFLTNSKSH 166
>U64862-6|AAB52623.3| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 226 protein.
Length = 560
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 73 IPPEWTARTLLLNITWETRRNCLITTPCRDSWLSRIISTVLMNANHYRQ 219
+PP R +L TW +C D+WL+ ++ V ++ YR+
Sbjct: 242 LPPCKIQRRHMLKETWYFECHCERCDDPDDNWLTSVLCPVCISKTEYRK 290
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
F39B2.4b protein.
Length = 1589
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 111 HHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQGYQTTRS 290
HH+ LPHH +Q+ H +P P + + ++ H Q Q +
Sbjct: 1524 HHMQQHPHLPHH----QQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQQQ 1579
Query: 291 YHHDF-RNPH 317
+HH + PH
Sbjct: 1580 HHHQHQQQPH 1589
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
F39B2.4a protein.
Length = 1587
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 111 HHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQGYQTTRS 290
HH+ LPHH +Q+ H +P P + + ++ H Q Q +
Sbjct: 1522 HHMQQHPHLPHH----QQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQQQ 1577
Query: 291 YHHDF-RNPH 317
+HH + PH
Sbjct: 1578 HHHQHQQQPH 1587
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 111 HHVGNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSPRHAIKDEESPLHHQGYQTTRS 290
HH+ LPHH +Q+ H +P P + + ++ H Q Q +
Sbjct: 1522 HHMQQHPHLPHH----QQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQQQ 1577
Query: 291 YHHDF-RNPH 317
+HH + PH
Sbjct: 1578 HHHQHQQQPH 1587
>U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical
protein F26F4.8 protein.
Length = 329
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 145 TTPCRDSWLSRIISTVLMNANHYRQAHLV 231
T PCR +++ T+L NH AH V
Sbjct: 105 TLPCRAEGCDQLVETMLEGENHANTAHHV 133
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +3
Query: 63 IPNDTARMDSKNTSSKHHV-GNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSP 227
IP S T K + GN K T Q N + P C P P G P
Sbjct: 105 IPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPP 160
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +3
Query: 63 IPNDTARMDSKNTSSKHHV-GNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSP 227
IP S T K + GN K T Q N + P C P P G P
Sbjct: 142 IPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPP 197
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +3
Query: 63 IPNDTARMDSKNTSSKHHV-GNTTKLPHHDTLSRQLAQQNHLHSPYECEPLPPGSP 227
IP S T K + GN K T Q N + P C P P G P
Sbjct: 126 IPGPPGPRGSSGTPGKPGLPGNAGKPGMPGTTPNQTCPLNQVREPPPCRPCPKGPP 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,961
Number of Sequences: 27780
Number of extensions: 234554
Number of successful extensions: 639
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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